Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271865g00045 ATGGCTGCTGCTGTTAGGTTTTCCCATTTAAAACGCCTCCAGAGTTCAATTAAGGGTTCTCTGAATGTTGAACTGTGTCAAAATAGTGTGGATATGAACCTTGCAAGGATTTCAAGGTTGCCTAGTGATTCACTTAGCAATGTTTATTACAAAAAGGAGGAGTTACAGTCCCCTCGAATGTTTGCTAAGAATAGGTTTAGTAGTATTGCTTCTGAATATCATGCTAGTAGCTCCATAGTTATTGCTAAACATAATGCATTAGTTTATCCTAGATTGTCCTCTAGCTTTTGTTTCCGGGGTGCTCTTCCTTTTGTTTCGAAGAGCCCTGTGTTGAATTGCCGGACATATTCATCATCTTTCGGTGGCAAAGGAACCAGGGATGATAATGGCACAGAAGTTGCTGCTGGTTCTGGTGCTGGTGATGTGAATTCGGGTGATGATTCTGTTGTTGCTGGTGATTTAGCTGAGAAGATGAAAGATGCATGGAAGAGTGTGGTAGAGACAGCTAAACATGCTGGAGAAAAGGTTCAAGAAACCTCGGATGAGCTGACTCCGTATGCTCAACAGTTGCTTGATTCACATCCGTATCTTAACAAGGTGGTTATTCCAGTTGGTAGTACTTTAACTGCTACTCTAGTAGCTTGGTTTTTGATGCCTTGGATTTTGAGGAAATTTCACAAATATGCAATGAAAGGTCCAATTTCTCTTATACCTGGAAGCACATCATGGGAATCGGTTTCTTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCGGTGCGATACTTAGTTACCTTCATCACATTATCACAGATTGGTGCAATGGTAGCTCCAACAACTATAACTTCGCAATATCTTGTGCCAGCTTGGAGGGGTGCAGCGATTATTTCATTTGTATGGTTTTTGCATAGATGGAAGACAAACGTTTTTCAGCGTACCCTGTCCAATCAAGGTTTACTTGGACTTGACAGGGAGAAATTGCTTACTCTAGATAGAATCTCATCTGTTGGTCTGTTTATGATTGGTGTAATGGCTTTGGCTGAGGCTTGCGGTGTGGCTGTGCAATCTATCTTAACTGTTGGTGGCATCGGAGGAGTTGCCACTGCTTTTGCTGCAAGAGACATTCTTGGCAATGTTTTCAGTGGTTTATCTATCCAGTTTTCCAGGCCCTTTTCAATAGGGGATACAATAAAAGCTGGCTCAGTTGAAGGTCAAGTGGTGGAAATGGGCCTTACTACAACATCATTACTGAGTACTGAGAAGTTTCCAGTCATAGTGCCTAACTCTTTTTTCTCTAGCCAGGTTATAGTGAACAAATCTCGTGCTGAATGTCGCGCCATTGTTAGCAAAATCCCTCTGCAAGTTGAGGACTTAAGTAAGATTCCCCAGTTATCTGAGGATATTAAGAGCATGCTAAGATCACATGCAAAGGTGTTCTTGGGAAAAGAGGTTCCTTACTGTTTCTTGTCACGAGTGGAAAGTTCATACGCAGAATTGACTATTGGATACAACCTCAAACACATGCGAAAAGATGAGTTATTCGCAGCAGAACAAGATGTTCTCCTGAATGCAGTTCAGGTCATTAAGAATCATGGGGTAGCACTTGGCAGCACCTTACCAGGTTAA 1626 0.42 MAAAVRFSHLKRLQSSIKGSLNVELCQNSVDMNLARISRLPSDSLSNVYYKKEELQSPRMFAKNRFSSIASEYHASSSIVIAKHNALVYPRLSSSFCFRGALPFVSKSPVLNCRTYSSSFGGKGTRDDNGTEVAAGSGAGDVNSGDDSVVAGDLAEKMKDAWKSVVETAKHAGEKVQETSDELTPYAQQLLDSHPYLNKVVIPVGSTLTATLVAWFLMPWILRKFHKYAMKGPISLIPGSTSWESVSYEKSFWGAMEDPVRYLVTFITLSQIGAMVAPTTITSQYLVPAWRGAAIISFVWFLHRWKTNVFQRTLSNQGLLGLDREKLLTLDRISSVGLFMIGVMALAEACGVAVQSILTVGGIGGVATAFAARDILGNVFSGLSIQFSRPFSIGDTIKAGSVEGQVVEMGLTTTSLLSTEKFPVIVPNSFFSSQVIVNKSRAECRAIVSKIPLQVEDLSKIPQLSEDIKSMLRSHAKVFLGKEVPYCFLSRVESSYAELTIGYNLKHMRKDELFAAEQDVLLNAVQVIKNHGVALGSTLPG 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271865g00045 541 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 156 538 - -
Stsc271865g00045 541 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 373 IPR011014 GO:0016020
Stsc271865g00045 541 Pfam Mechanosensitive ion channel 333 534 IPR006685 GO:0016020|GO:0055085
Stsc271865g00045 541 Gene3D - 289 389 - -
Stsc271865g00045 541 SUPERFAMILY Sm-like ribonucleoproteins 374 439 IPR010920 -
Stsc271865g00045 541 Gene3D - 390 438 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271865g00045 Stsc-Chr271865 281948 286155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271865g00045 111 538 Mechanosensitive Ion Channel Family AT4G00290 63.785 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271865g00045 K22047 - gmx:100789047 770.385