Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271865g00044 ATGGCTGCTGCTGTTAGGTTTTCCCATTTAAAACGCCTCCAGAGTTCAATTAAGGGTTCTCTGAATGTTGAACTGTGTCAAAATAGTGTGGATATGAACCTTGCAAGGATTTCAAGGTTGCCTAGTGATTCACTTAGCAATGTTTATTACAAAAAGGAGGAGTTACAGTCCCCTCGAATGTTTGCTAAGAATAGGTTTAGTAGTATTGCTTCTGAATATCATGCTAGTAGCTCCATAGTTATTGCTAAACATAATGCATTAGTTTATCCTAGATTGTCCTCTAGCTTTTGTTTCCGGGGTGCTCTTCCTTTTGTTTCGAAGAGCCCTGTGTTGAATTGCCGGACATATTCATCATCTTTCGGTGGCAAAGGAACCAGGGATGATAATGGCACAGAAGTTGCTGCTGGTTCTGGTGCTGGTGATGTGAATTCGGGTGATGATTCTGTTGTTGCTGGTGATTTAGCTGAGAAGATGAAAGATGCATGGAAGAGTGTGGTAGAGACAGCTAAACATGCTGGAGAAAAGGTTCAAGAAACCTCGGATGAGCTGACTCCGTATGCTCAACAGTTGCTTGATTCACATCCGTATCTTAACAAGGTGGTTATTCCAGTTGGTAGTACTTTAACTGCTACTCTAGTAGCTTGGTTTTTGATGCCTTGGATTTTGAGGAAATTTCACAAATATGCAATGAAAGGTCCAATTTCTCTTATACCTGGAAGCACATCATGGGAATCGGTTTCTTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCGGTGCGATACTTAGTTACCTTCATCACATTATCACAGATTGGTGCAATGGTAGCTCCAACAACTATAACTTCGCAATATCTTGTGCCAGCTTGGAGGGGTGCAGCGATTATTTCATTTGTATGGTTTTTGCATAGATGGAAGACAAACGTTTTTCAGCGTACCCTGTCCAATCAAGGTTTACTTGGACTTGACAGGGAGAAATTGCTTACTCTAGATAGAATCTCATCTGTTGGTCTGTTTATGATTGGTGTAATGGCTTTGGCTGAGGCTTGCGGTGTGGCTGTGCAATCTATCTTAACTGTTGGTGGCATCGGAGGAGTTGCCACTGCTTTTGCTGCAAGAGACATTCTTGGCAATGTTTTCAGTGGTTTATCTATCCAGTTTTCCAGGCCCTTTTCAATAGGGGATACAATAAAAAACCTGTGTCTGTGTGCATCCTCTTTTCCTAAAACGTGGCTGGGAAATCGCACAAATTGCAGGCTGGCTCAGTTGAAGGTCAAGTGGTGGAAATGGGCCTTACTACAACATCATTACTGA 1314 0.4224 MAAAVRFSHLKRLQSSIKGSLNVELCQNSVDMNLARISRLPSDSLSNVYYKKEELQSPRMFAKNRFSSIASEYHASSSIVIAKHNALVYPRLSSSFCFRGALPFVSKSPVLNCRTYSSSFGGKGTRDDNGTEVAAGSGAGDVNSGDDSVVAGDLAEKMKDAWKSVVETAKHAGEKVQETSDELTPYAQQLLDSHPYLNKVVIPVGSTLTATLVAWFLMPWILRKFHKYAMKGPISLIPGSTSWESVSYEKSFWGAMEDPVRYLVTFITLSQIGAMVAPTTITSQYLVPAWRGAAIISFVWFLHRWKTNVFQRTLSNQGLLGLDREKLLTLDRISSVGLFMIGVMALAEACGVAVQSILTVGGIGGVATAFAARDILGNVFSGLSIQFSRPFSIGDTIKNLCLCASSFPKTWLGNRTNCRLAQLKVKWWKWALLQHHY 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271865g00044 437 Gene3D - 289 389 - -
Stsc271865g00044 437 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 373 IPR011014 GO:0016020
Stsc271865g00044 437 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 156 398 - -
Stsc271865g00044 437 Pfam Mechanosensitive ion channel 333 398 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271865g00044 Stsc-Chr271865 281948 286155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271865g00044 111 398 Mechanosensitive Ion Channel Family AT4G00290 59.722 3.55e-112 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271865g00044 K22047 - gmx:100789047 532.717