Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271865g00041 ATGGCTTTGATTTTATCTATGGAAGAAGTTAAAGTTAAAATCATTTCTAGAGAAGATATTAAACCTTCTTCTACAACACCTTCTCACCTAAGAACCTATAAATACTCCATTTTGGATCACCTTACTCCCGCTAGTCATACTCCTGTGATTTTCTTCTACACTGCCTCAAGCAATCCCTTTGAATTTTTCGAGAGATTAGAATTGCTTAAACAATCATTATCTGAGACACTAACACAACTCTACCCTCTTTGTGGCAAGATCAAAGATGATTCCTCCATTGACTGCAACGATGAAGGTGCTAATTTTGTAGTAGCAAAAGTGAATTGTCCTATTAGAAAGTTTCTAAGTAACCCTGACTTGAATTCTTTGGACAAGTTTATTCCAGTTTCATTTTTCCATGAAATATCAGTAGGAGATCATGTGACTAACATTCAAGTCAATGTCTTCGAGTGTGGCGGAATTGCCATTGGAGTTTGCATTTCGCATAGGATCGTTGATGGTGGTACATTTGAAGTCTTCTTTAAGATGTGGATAGAAAGAATTGGCCGCAACCGCAATTTAAAACCCTTGACAGAACCGAATTTCGCTACAAAGTCTCTGTTTCCTGCAAGTACTTTACATCTTAGAGACTTACATAAGGAAACATGGTTGTCTTGTTTTAAGGAAGGAAATTGGGTTACAAAGAGGTTCTTGTTCACAAGTTCAGCTATTGCCACCCTCAAGGCTCAGGTATTGGCAAATTCTTCCTCCAGCGATCCCTTGAAGAATCATCCTACGCGTGTCCAGATAGTTTCTGCATTTTTGTGGAAGTGTCTCATGGCCGTGTCAAAGGTACAATTTGGAATCCAAAGCCCTTTTATGATCTTCCATATAATGAACCTTCGTCGAATTTTAAAAGGTTCTCTACATCCTGAGAATTCTATAGGGAACTTTTTATGGATAACACCTGTAGAACACATGAGTGGGCATGAGCTGAATTTGGATGAACTGGTGAGTAAATTGAAGAACTCGATTCAACATGTTGATGAGAATTTCGTTGCAAGCTTGCAAAGTGAGGAGGGAAATTCAATTGTAGAAGGTGCTCTTAGGAATTTGGGAGATAAATCAAGGAATATGGGTGATGCATTGGAAAGCGTAAGTTTTACTAGTTGGTCTAAATTTGGAGTTTATAATGCTGATTTAGGGTGGGGAAAACCTATGTGGGTTAGTTTTATCGGTATAAAAGGTAATGCAATGTTCATCAATACGGTAATCTTAGTTGAAACTAGGTTTAATGATAGTATAGAAGCTTGGGTTATCTTGGATGAGAAGAAAATGAATCTTTTGATGTCAAGCACTGAATTACTCACTTATGCAACTCTTGATCCAAGTCCTTTGGCAGTGGCTACTAACTCAAGGTTATAG 1404 0.3782 MALILSMEEVKVKIISREDIKPSSTTPSHLRTYKYSILDHLTPASHTPVIFFYTASSNPFEFFERLELLKQSLSETLTQLYPLCGKIKDDSSIDCNDEGANFVVAKVNCPIRKFLSNPDLNSLDKFIPVSFFHEISVGDHVTNIQVNVFECGGIAIGVCISHRIVDGGTFEVFFKMWIERIGRNRNLKPLTEPNFATKSLFPASTLHLRDLHKETWLSCFKEGNWVTKRFLFTSSAIATLKAQVLANSSSSDPLKNHPTRVQIVSAFLWKCLMAVSKVQFGIQSPFMIFHIMNLRRILKGSLHPENSIGNFLWITPVEHMSGHELNLDELVSKLKNSIQHVDENFVASLQSEEGNSIVEGALRNLGDKSRNMGDALESVSFTSWSKFGVYNADLGWGKPMWVSFIGIKGNAMFINTVILVETRFNDSIEAWVILDEKKMNLLMSSTELLTYATLDPSPLAVATNSRL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271865g00041 467 PANTHER F21J9.9 13 452 - -
Stsc271865g00041 467 Gene3D - 223 451 IPR023213 -
Stsc271865g00041 467 Pfam Transferase family 11 448 - -
Stsc271865g00041 467 Gene3D - 9 209 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271865g00041 Stsc-Chr271865 250099 251502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271865g00041 10 442 Monolignol Biosynthesis Gene Families AT5G48930 25.163 8.44e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271865g00041 - - aip:107628104 576.63