Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271865g00031 ATGGGTTTCCCCGTTGGTTACACGGAGGTTTTCTTCCCTCATCTCTTCCTCCGCTTACTCACCTTCCTCGGCCTCCTCCGCAACCTCATCTTCCACCTCTTCCGCCTCCTCGGACTCTCCGAACTCCTCATCGACACCACCACCGACACCACCACCATCACCAACCACCACCACAACCACCTTGTCTCCTCCGATCCCACCCGAACCCTCTCCGCCATCCTCATCCGCGAGTTCCTCCCCGTGGTAACGTTCCGAGAAATCCTCGTAACTAACAGCGATGATGACGTGGCAGCAGCATCGGCTCAACTAACTAGTACTGGCAGCTGCGCGGTTTGCCTAACAGAATTAGTTATGGAGGACGAGATCCGGTGGTTGCGAAACTGCAAGCACGTGTTCCACAGGGAGTGTGTGGACCGTTGGATTGATCACGATCAGAAGACGTGTCCGCTTTGTAGGACGTCGTTCGTTCCTGATGAAATGGTTGATCTGTATAATCAACGGTTGTGGGCTGCTTCTGGTGTTAGTGAGTTCTACGTAGATTACACTTCTTCTCTCTAA 558 0.5341 MGFPVGYTEVFFPHLFLRLLTFLGLLRNLIFHLFRLLGLSELLIDTTTDTTTITNHHHNHLVSSDPTRTLSAILIREFLPVVTFREILVTNSDDDVAAASAQLTSTGSCAVCLTELVMEDEIRWLRNCKHVFHRECVDRWIDHDQKTCPLCRTSFVPDEMVDLYNQRLWAASGVSEFYVDYTSSL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271865g00031 185 ProSiteProfiles Zinc finger RING-type profile. 109 152 IPR001841 -
Stsc271865g00031 185 Pfam Ring finger domain 108 152 IPR001841 -
Stsc271865g00031 185 SUPERFAMILY RING/U-box 84 158 - -
Stsc271865g00031 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 157 IPR013083 -
Stsc271865g00031 185 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 171 - -
Stsc271865g00031 185 SMART ring_2 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271865g00031 Stsc-Chr271865 192783 193340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271865g00031 1 184 C3H Transcription Factor Family AT1G63840 42.408 6.92e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271865g00031 K16281 - mof:131166229 188.348