Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271865g00027 ATGAAAGGTCACCGGTACTCTAGCTCCGACCACCGGAGCACGCCGGAACGCGGTGGATACTCTCCCGGCTACGCCTCTTCCGAGGTCAGCGCCAAGTCAACTTCTTCCTCCACCGCCTCCCGGAGTTCGGTCTCCTCCGCCGCTAGGTCTGTAGCCGGAATCTTCACCGCCTGCTTCACGCCGCCTGAAGCCACCAGCAGCAGCAGAAGCTCCAAGAGCTTCGGGGATTCTGAGGAGTTCAAAGCTCCATCTGTTGCATCGGATGTTTCGAGAGCTAGTAGTCAGAAAGGGCGTGGCTCGAATCGAGGCATCAACATCAGCACAAATAAAGAGCCTGGCACTGTAAAATTCACCATGGAGGAAATCCAGAAAGCCACAAGAAACTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTCGGTACGGTCTACAAGGCCAAACTCTTGGATGGAAAGGTGGTCGCAGTAAAGCGCGCAAAGAAGAGTCTATATGAGAAGCATTTAGGTGTGGAGTTCCAGAGTGAGATACAAACACTATCTAGGGTTGAACATTTGAACTTGGTCAAATTCTATGGCTATTTGGAGCAAGGGGATGAAAGAATTGTTGTTGTGGAGTATGTTCCAAATGGAAACCTAAGAGAACATTTGGATTGCATTCATGGAAAATTTCTTGACCTTCCTACACGTCTAGACATTGCAATTGATGTAGCTCATGCCATCACCTATCTTCATATGTATATAGATCATCCTATCATTCATAGAGACATAAAATCTTCCAACATTCTCCTCACCGAAAATTTCCGAGCTAAGGTAGCAGATTTTGGTTTTGCAAAACAAGCACCGGATAGTGACTCCGGCATGACTCATGTATCCACCCAAGTTAAAGGAACAGCAGGTTACTTGGACCCTGAATACCTGAAAACATATCAACTAACTGAAAAGAGTGATGTGTATTCATTTGGGGTTATGCTTGTTGAACTCATCACAGGAAGACGTCCCATTGAACCAAAATTCGAACTCAGAGAGCGAGTAACTGCAAAATGGGCTATGAAGAAATTTGTTGATGGAGAAGCTACCACTGTCTTGGATCCAAGACTTGATCAAACTGCAGCTAATACACTTGCCCTTGAAAAGATTCTTGAACTAGCATTGCAGTGTCTGGCACCTAGGAGACAAAACAGGCCTAACATGAAGAGATGCGCCGAGATCCTTTGGACGATCCGCAAGGATTACAGGGAGCTATCAGCCTCAGACTTTCGCTCGCTTTCTTCTGCTTCTACCCAGAGGAGCTCTTCAATAAGAGAGTGA 1308 0.4664 MKGHRYSSSDHRSTPERGGYSPGYASSEVSAKSTSSSTASRSSVSSAARSVAGIFTACFTPPEATSSSRSSKSFGDSEEFKAPSVASDVSRASSQKGRGSNRGINISTNKEPGTVKFTMEEIQKATRNFSPSFKIGQGGFGTVYKAKLLDGKVVAVKRAKKSLYEKHLGVEFQSEIQTLSRVEHLNLVKFYGYLEQGDERIVVVEYVPNGNLREHLDCIHGKFLDLPTRLDIAIDVAHAITYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFAKQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVMLVELITGRRPIEPKFELRERVTAKWAMKKFVDGEATTVLDPRLDQTAANTLALEKILELALQCLAPRRQNRPNMKRCAEILWTIRKDYRELSASDFRSLSSASTQRSSSIRE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271865g00027 435 MobiDBLite consensus disorder prediction 26 43 - -
Stsc271865g00027 435 SMART serkin_6 129 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271865g00027 435 MobiDBLite consensus disorder prediction 1 43 - -
Stsc271865g00027 435 CDD STKc_IRAK 135 404 - -
Stsc271865g00027 435 Gene3D Phosphorylase Kinase; domain 1 88 206 - -
Stsc271865g00027 435 PANTHER OS01G0750732 PROTEIN 32 421 - -
Stsc271865g00027 435 MobiDBLite consensus disorder prediction 87 110 - -
Stsc271865g00027 435 SUPERFAMILY Protein kinase-like (PK-like) 105 407 IPR011009 -
Stsc271865g00027 435 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 88 206 - -
Stsc271865g00027 435 ProSitePatterns Protein kinases ATP-binding region signature. 135 161 IPR017441 GO:0005524
Stsc271865g00027 435 ProSiteProfiles Protein kinase domain profile. 129 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271865g00027 435 Pfam Protein kinase domain 134 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271865g00027 435 MobiDBLite consensus disorder prediction 60 110 - -
Stsc271865g00027 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Stsc271865g00027 435 Gene3D Transferase(Phosphotransferase) domain 1 207 428 - -
Stsc271865g00027 435 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 207 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271865g00027 Stsc-Chr271865 157838 160576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271865g00027 45 397 Receptor kinase-like Gene Family AT1G79620 42.350 1.19e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Stsc271865g00027 Pkinase 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271865g00027 - - gmx:100305435 630.172