Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271865g00025 ATGGCTGGTGCACTTGTTGGTGGAGCTTTCCTTTCTGGATTCATTAATGTTCTCTTTGACAGGTTTCTTACCACGGATGCGGTCAACCTGGTCTTGGGCAAGAAACTTGGCCCTGACTTGGTTGAGAGGCTGAAGATTTCTCTCCTTGCTGCTGAAGCTCTGCTTGATGATGCTGAGTACAAGCAACTGGGCAACAAATCTGTGAGGGAGTGGCTCAACAGTCTCAAGGATGCAGTCTACATTGCTGATGACTTGCTGGACGATGTCCTCACCAAAGCTGCTACTCAAAAGGAGGTACGTTCTTTCTGGTCCATTAGCTTCCTCAACCGGGACAGGGAGATAGTAGATAAGATGGAAGGGGTTGTTAGAAAGATAGAATTTCTTGTAAAGCAAAAGGATTTCCTTGGTCTTCAAAAGATTACTAAGGATGATAGTAACTTTGAAAGTCAGCTATCTGTGATTCCTATTGTTGGCATGGGTGGGGTTGGTAAAACAACCTTAGCAAAATGGGTGTATAGTGCTGTAGAGGGATTTGATTTGAAAGCATGGGTTTGCATCTCTGAAACGTTTGATATTGTTGAGGTTACAAGGACAATCATCGAAGAAATCACTAGAAGTACTTGTATCATTCGGAGTTTAAATTCGCTTCAGAATGAATTGCAGGAAATCTTGTCAGAAAAGAAGTTCTTTATTGTTCTAGACGATGTCTGGTGCGATGATGCCAATAATTGGAAGCAATTTAAAACTCCTTTTCAATGTGGGGGTAAGGGTAGTATGATTCTTCTAACAAGTCGCATTAAAGAGGTTGCTTCAGTAGTTCAAACATGTCCCTCTTACTTTCTTAATGAGTTGTCGGAAGACTGTTGTTGGTTACTTTTTGCAGACAACGCATGTTTTCCAGAGTCAAAGGGGAATCCAGCACTAGAGGAAATCGGTAGAAAGATTGTCCAGAAGTGTAAAGGATTGCCATTAGCTATAGAAACACTTGGGCGCTTGTTGCGAGGAAAGGATGATGTTAAAGAATGGAATGTTGTTCTAATGAGTGACATGTGGGAATTTTCTATGAAAAATAGTAGAATTATTCCAGCATTGTTAATAAGCTACTTCCAGCTCCCTGCCTATTTAAAGCGTTGTTTCGTTTATTGTTCATTGTATCCCAAAGATCACCGCTTTTACAAAGATGAACTAGTGTTGTTATGGATGGCTGAAGATCTTTTAAGGCCACCAAAGAGAGGAGAGAGTTTAGAAGAAGTTGGCAGCAAGTGTTTTGAAGAATTAGTTTCCAGGTTATTTTTTAAACAAGATAGGTATTTTGTTAAGATGCATGATCTATTGCATGACATGGCAATTTTCCTTGCCGGAGACTTCTATTGTAGATTAGAAGAGCATAGCAAATCAAAAGGCGTGACTAATTTGACTCGGCATATGTCCTTTAAAAGATTGCGTAATGTGATCTCAGAAAATTTTGATTCCATCAGTGAAGCTAAATCTTTGAGGACATTCTTGCCGGTCAGTTGGTTTTCTCAATGCAGCTTCGATTGTAGTGCAAGTTTCCATGTCTTAATGGAGCTCAAGTATTTGAGAGTTTTGTCATTTGTCATGTTCACAAAACTTGATGCATTACCTGATTCAATAGGTGCATTGATTCATCTTCGCTATTTGAATCTCTCTGGGACTCACATTAATAGGTTGCCAGAAACATTGTGTAACTTGCATAATCTACAAACATTAATATTGTGTGCATGTACTAGATTGACCATGTTGCCTAGTGGCATGCATAATCTTGTGAATTTACGTTGCCTTGATCTTAGGGAAACTTGTTTGGAAGAAATGCCTGGAGGAATAAGCAAATTGAAACAATTGCGTATTTTAGATTACTTCATCGTTGGCAGGCATGAAGATAATGGAATCCAAGAATTAGGAGGGCTCTCAAATCTTCATGGGTCACTTGATATCAAGAAATTGGAGAATATTGTTGATGTGAATAAAGCAAACTGTGCGAGGATGATGGATAAGAAGCACCTTGACAACTTATGGTTGGAATGGTCTTCTGGCAATGATATGGTTCCAAATACACAAACTGAAAGGGAAATATTGGACAGCTTGCAACCGCACAATGGCTTGAAAGAGTTGATAATCAAGGGATATAAGGGTACATTGTTTCCAAATTGGATAGGACATTGTTCCTACCAAAACATGACTCATGTATCTCTAGAGTCTTCCAACAATTGCTGCATGTTGCCTTCACTTGGGCAGCTGCCTTCTCTTAAGTCCCTTCGCATTCAAGGTTTTGATCAGCTGAAGAGCGTTGGCATGGAGTTTTACAAGAATGAAGGAGATCGTCAGTCTTCGCATATTGCACCATTTCCCTTACTGGAGACTTTGGAGTTTGATAACATGCCAAGTTGGGAGGTGTGGCACGTATCTGACTCGGAAACTTTTCTTCAACTCAGGAACCTTCAAATAAGAAATTGTGGAATGCTAAAGGGAGATATGCTTAAACAGGTATTCTTGAGAATCGTTTCTTCTCTGGCTGATGTTTCTAAAGTTTGCAAACTGCAAATTTGGGAAGTAATGTCTCGGCAGATGCTACTTAATGGGGATAGGTTATCAATTAGGGGATGTAAATTTGTGGTGGAGTTTGCATTTAACGCAATGATCAGCATCAACCATCTAAGTTGCATCCGAGAAATAGAAATCTCAGGGTGTTCATTTGCTGCACCCTTTCCAGGCAATTGTTTACCCAAATCTTTGCAAAAGCTTGTGATCATGTTTTGCAGCAAACTGGAATTCCCCCCGCAACAACAACAACAGAATTCTGATTTGGTGGAGCTACATATAGAATACAGCTGTGTTTCACTTGCCTCATTGTCGTTGGATGCCTTTCCCAAGCTGAAGACACTGGGGATATCAAATTGTAAGAATCTGAAATCAGTTTCAATGTCTGAGCCACCACACACTGCTCTTCAACGTCTCGCCATCCATGAATGCCCCAGATTCGTGTCAATTTCAGGAGAAGGACTAGCTGCACCCAACTTGACTCATCTCGATGTCAGCTTCTGCTCAAACTTGGAGGCATTGCCACGTGACATGAATACTCTTTTCCCAAGTTTACTGTCTCTCGACATTCATGGTTGCCCGAAAATTCCAAGGTTGCCAGAGGATGTTTTGCTGCCTAACCTGAAACAACTCACTGTGGGAGGTTGCAAGTCACAACTGACGGGTCTATCAGCCATGGGCAACTTAGAAGCCCTCACTCATCTCACCATTTATGATGATACCTTTGAGAGCATAACAAAGTCATACCCAGAAGTTGGTTCACTGCCTCACCTTCCATCACTTACCACTTTATGTCTCTATGACTTTTTTAGTCTGGAGACGTTGGAATGCAACCAGCTTTCCCCCCTCATCTCCCTCCAAGAATTAGTTATACAAGACTGTTCAGGACTGGAGAATATGGCAGGAGAAAAGCTACCTTCCTCTCTCTTACTATTTCATGTTATAAGATGTCCTTTGCTGGGAGAACACTGCGAGAACAAGCGCCAACAAATTTGGCCCAAAATTGAACACATTCCCACCATTCGAGTTAACAGTCACAAAATTGTCTGA 3609 0.4098 MAGALVGGAFLSGFINVLFDRFLTTDAVNLVLGKKLGPDLVERLKISLLAAEALLDDAEYKQLGNKSVREWLNSLKDAVYIADDLLDDVLTKAATQKEVRSFWSISFLNRDREIVDKMEGVVRKIEFLVKQKDFLGLQKITKDDSNFESQLSVIPIVGMGGVGKTTLAKWVYSAVEGFDLKAWVCISETFDIVEVTRTIIEEITRSTCIIRSLNSLQNELQEILSEKKFFIVLDDVWCDDANNWKQFKTPFQCGGKGSMILLTSRIKEVASVVQTCPSYFLNELSEDCCWLLFADNACFPESKGNPALEEIGRKIVQKCKGLPLAIETLGRLLRGKDDVKEWNVVLMSDMWEFSMKNSRIIPALLISYFQLPAYLKRCFVYCSLYPKDHRFYKDELVLLWMAEDLLRPPKRGESLEEVGSKCFEELVSRLFFKQDRYFVKMHDLLHDMAIFLAGDFYCRLEEHSKSKGVTNLTRHMSFKRLRNVISENFDSISEAKSLRTFLPVSWFSQCSFDCSASFHVLMELKYLRVLSFVMFTKLDALPDSIGALIHLRYLNLSGTHINRLPETLCNLHNLQTLILCACTRLTMLPSGMHNLVNLRCLDLRETCLEEMPGGISKLKQLRILDYFIVGRHEDNGIQELGGLSNLHGSLDIKKLENIVDVNKANCARMMDKKHLDNLWLEWSSGNDMVPNTQTEREILDSLQPHNGLKELIIKGYKGTLFPNWIGHCSYQNMTHVSLESSNNCCMLPSLGQLPSLKSLRIQGFDQLKSVGMEFYKNEGDRQSSHIAPFPLLETLEFDNMPSWEVWHVSDSETFLQLRNLQIRNCGMLKGDMLKQVFLRIVSSLADVSKVCKLQIWEVMSRQMLLNGDRLSIRGCKFVVEFAFNAMISINHLSCIREIEISGCSFAAPFPGNCLPKSLQKLVIMFCSKLEFPPQQQQQNSDLVELHIEYSCVSLASLSLDAFPKLKTLGISNCKNLKSVSMSEPPHTALQRLAIHECPRFVSISGEGLAAPNLTHLDVSFCSNLEALPRDMNTLFPSLLSLDIHGCPKIPRLPEDVLLPNLKQLTVGGCKSQLTGLSAMGNLEALTHLTIYDDTFESITKSYPEVGSLPHLPSLTTLCLYDFFSLETLECNQLSPLISLQELVIQDCSGLENMAGEKLPSSLLLFHVIRCPLLGEHCENKRQQIWPKIEHIPTIRVNSHKIV 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271865g00025 1202 Gene3D - 283 366 IPR042197 -
Stsc271865g00025 1202 SUPERFAMILY L domain-like 440 830 - -
Stsc271865g00025 1202 Pfam NB-ARC domain 146 346 IPR002182 GO:0043531
Stsc271865g00025 1202 Coils Coil 41 61 - -
Stsc271865g00025 1202 Gene3D - 367 450 IPR036388 -
Stsc271865g00025 1202 SUPERFAMILY L domain-like 890 1187 - -
Stsc271865g00025 1202 Gene3D Ribonuclease Inhibitor 507 666 IPR032675 -
Stsc271865g00025 1202 Gene3D Ribonuclease Inhibitor 667 852 IPR032675 -
Stsc271865g00025 1202 Gene3D Ribonuclease Inhibitor 870 1033 IPR032675 -
Stsc271865g00025 1202 Gene3D Ribonuclease Inhibitor 1034 1187 IPR032675 -
Stsc271865g00025 1202 Pfam Rx N-terminal domain 39 98 IPR041118 -
Stsc271865g00025 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 382 IPR027417 -
Stsc271865g00025 1202 SMART LRR_typ_2 595 618 IPR003591 -
Stsc271865g00025 1202 SMART LRR_typ_2 548 571 IPR003591 -
Stsc271865g00025 1202 FunFam Probable disease resistance protein At1g63360 368 451 - -
Stsc271865g00025 1202 PANTHER DISEASE RESISTANCE PROTEIN RP 45 832 IPR044974 GO:0006952
Stsc271865g00025 1202 SMART LRR_CC_2 962 995 IPR006553 -
Stsc271865g00025 1202 SMART LRR_CC_2 1058 1091 IPR006553 -
Stsc271865g00025 1202 SMART LRR_CC_2 1010 1037 IPR006553 -
Stsc271865g00025 1202 SMART LRR_CC_2 571 598 IPR006553 -
Stsc271865g00025 1202 PRINTS Disease resistance protein signature 223 237 - -
Stsc271865g00025 1202 PRINTS Disease resistance protein signature 319 333 - -
Stsc271865g00025 1202 PRINTS Disease resistance protein signature 153 168 - -
Stsc271865g00025 1202 PRINTS Disease resistance protein signature 960 976 - -
Stsc271865g00025 1202 Gene3D - 109 278 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271865g00025 Stsc-Chr271865 143577 150917 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271865g00025 154 347 WRKY Transcription Factor Family AT5G45050 27.500 1.98e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271865g00025 - - adu:110277908 1411.74