Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc271865g00020 | ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTTCACGGAACGCCAGTGTATTACTATTGCCCGCCGGCTTTGGAAGAGCGTGAGTCTCTAACCTCTAACGACGGTAATAGTACAGCTGCTTCACTCGCTGCTGGACTGCTCATCGGCTTGAACTTGGAATCATCCATACCAGATACTTATCAGTCCCCTCCTGCGCCTCTACCGTATGATACTATCCTGAGAGATCCTGCATTAACAGATTCTGAGTCTGGGAGAGAAACCATTAGTGGTAGTAGTTTCGAAACTTTAGTTACTTGTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAATCTAAATCAGAATCATTATCTCCAAGGAAGCCGGAGCCTTTAAAATCGAATGAATCTCATGCACTGGTGACAGAAGAAGAGGATGTGTGTCCTATTTGTCTAGAAGAATATGATACTGAGAATCCTAAGTCATTGACGAAATGTGACCACCACTTTCACCTTTCATGCATTCTTGAGTGGATGGAAAGAAGCGACTCGTGTCCGATATGTGATCAGGAGATGATCTTTGACCAGACACTGGATTAG | 582 | 0.4399 | MGGCCCSARKPHLHGTPVYYYCPPALEERESLTSNDGNSTAASLAAGLLIGLNLESSIPDTYQSPPAPLPYDTILRDPALTDSESGRETISGSSFETLVTCEDVEESDCKAQSKSESLSPRKPEPLKSNESHALVTEEEDVCPICLEEYDTENPKSLTKCDHHFHLSCILEWMERSDSCPICDQEMIFDQTLD | 193 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc271865g00020 | 193 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 39 | 190 | - | - | |
| Stsc271865g00020 | 193 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 189 | IPR013083 | - | |
| Stsc271865g00020 | 193 | MobiDBLite | consensus disorder prediction | 110 | 133 | - | - | |
| Stsc271865g00020 | 193 | SMART | ring_2 | 142 | 182 | IPR001841 | - | |
| Stsc271865g00020 | 193 | FunFam | Putative E3 ubiquitin-protein ligase RHB1A | 118 | 187 | - | - | |
| Stsc271865g00020 | 193 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 183 | IPR001841 | - | |
| Stsc271865g00020 | 193 | SUPERFAMILY | RING/U-box | 133 | 189 | - | - | |
| Stsc271865g00020 | 193 | Pfam | Ring finger domain | 141 | 182 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc271865g00020 | Stsc-Chr271865 | 111602 | 114499 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc271865g00020 | 1 | 193 | C3H Transcription Factor Family | AT4G00335 | 57.513 | 1.18e-74 | 221 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc271865g00020 | - | - | gmx:100804435 | 325.865 |