Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271865g00019 ATGATGTTACCTTTTTACTGCCACCAAAATTCTCTCCTTCTTTCTCACTTTCTCACACTCAAAAACACAAACACCTTCTCTGCACTCTCCCAACCCCCCCAAAAAACAGAAACCATGCCACTCCCTCACACTCTCTTCTTCTTCTTCCTCCTCCAACACATTCTAACCTTCACCATTGCAACCCCTTCCACCACCATTCTAGAAGGAACCACCACACTCCGAAGCCCAAACAACACCTTCGAGCTTGGAATCTTCAACTTGCAACCTTCCAACAACTTCTACCTTTCAATCCGCTACACTTCCCTCCCAACCCAAATCCTCATTTGGGTCGCTAACCGCCACCAACCCGCCCCATCTCAACCCAACACCACCCTCCAGCTCACCAACTGCCACGTCAGCCTCACTCACCCCCAAACCTCTCTCCCTCTCTGGCAAACCCCAAAAAGCCCCTCTTTTTCTTCTTGCAATCTTCAGTTACTGGAAACTGGGAACTTGGTTCTTCTCTCTTCCGAAAACGACACCGTTTTGTGGCAGAGCTTCGACGAACCAACTGACACGTGGCTTCCGGGTATGAACTTGACCCAAACCCGATCCCTTGTTTCATGGAAAACCAAAACGGATCCTTCTCCGGGTCTTTACTCTCTGCGGCTGAAACCACCCAATTACGGTGAGCTTGAGCTTGTTTTCAACGGCACCGATTCGTATTGGTCCACCGGAAACTGGACCGGTGATTCTTTCCTCGGAATTCCTGAGATGACGAATCCGTACATTTACCGGTTCCATTTCGAGAAGCCTTTTACCGAAGATGCTTCGTTTGGGTTCACAGAGAGGACTTCAGATAGTGGCTTATTGCCGACGAGGTTCCGGTTGGAGCCTCAAGGTCAGGTTCAGCAGTACACATGGTGGAAGCAAGCTGGTACTTGGAACAGGTTTTGGTTCAAGCCTGAGCTTTGTCAAGTTCGAGGGCTTTGTGGGAGTTTTGGAGTTTGTAATGGTCAAGAAAGTTCTTATTGTGGTTGTGTTCATGGGTTTGTGCCTTCAGATGAAGTGGGTTGGAGGAATGGGGATTACTCTTTGGGTTGTGTTCGTGAGAAAAAGGATTCTTGTGTAAAAAGGGATGATTTTCAGGATATGGGGTTGGTGAAATTTGGATATGGTAGTATGAATATTTCTAAAGCTAAGTCTCTGAGCTTTTGTGAGAGTAAATGTTTGGGATCTTGTGAGTGTGTTGGGTTAACTTTCAGTGATGGGAGTGGTTTGTGTAGGAACTTTTATGGGTCAGTGTTTGATTTTCAGAATGTGAGTTCTGTTGGTGATGGTGGTGGTGTGTTGCGTGTGAGGGTGCCAAGAGAAAGGAATGGGGAGGTTTTGGATCGTACGGTTTTGATTGTTGCTGTCCTTGTTGGGTCAGCGGCAGTTTCGGGTGTTGTGGTGGTGACTTTGTTGGTGTTAGTGAAGAAAAAGAGGAAGAAGGAGTTGGAGGAGGAAGATGGATTTGTTCAAATGTTGAATTTGAGGGTCTTTTCATACAAGGAGCTTCAATTGGCAACAAGGGGTTTTTCTGAGAAAGTTGGACATGGGGGATTTGGGACTGTGTTTCAAGGTGAATTGAGTGATTCTACTCTTGTTGCCGTGAAGAGGTTGGAGAGGCCAGGGGGCGGGGAGAAAGAGTTCAGGGCTGAGGTTTCGACAATTGGGAACATTCAGCATGTTAATCTTGTGAGGCTTAGAGGTTTTTGTTCCGAGAATGCGCATAGGCTTTTGGTTTATGAGTTCATGCAAAATGGCGCATTGAGTGCTTATCTGCGCAAGGAAGGGCCTAGTTTGAGCTGGGATGTTAGGTTTCGAGTTGCGGTTGGAACGGCCAAAGGGATTGCATATTTACATGAGGAGTGTAGGAACTGCATTATACATTGTGATATCAAGCCTGAGAATATCCTCTTGGATAGTGATTTCACTGCAAAGGTTTCGGATTTCGGTTTGGCGAAGCTCATTGGGAGGGATTTCAGTAGGGTGTTGGCAACCATGAGGGGTACTTGGGGGTATGTTGCTCCAGAGTGGATTTCTGGGGTGGCGATTACCACGAAGGCAGATGTTTATAGTTATGGAATGACATTGCTTGAACTAATCGGTGGTCGCCGAAACGTTGAGGCACCGCCATCTGCTGGTGGTTGTGACAGAGACAAAGAGAGTGATTGTGAGACAGGAGAGAGATGGTTCTTTCCTCCTTGGGCAGCGCAGCAGATAATCGACGACAATGTGGCCGATGTGATGGATAAGAAGCTTGGAGATGTATATAACATTGAGGAGGCTAGAAGGGTTGGTTTGGTAGCAGTTTGGTGCATTCAAGATGATGAGGCTATGAGGCCAACAATGGGTATGGTGGTGAAAATGCTGGAAGGGTTAGTGGAAGTTAGTGTTCCTCCACCGCCGAAATTGCTACAAGCACTGGTCACCGGCGAGTCCTTTCATGGCGTCAAGGCTGATTCTGGCTATGAGATAGCCACCGGCGGAAGCTTATCCGGCGGCAACTTGGAAGTGTCAACTGCTGATTCAGAATCATATGTAGGAGATGCATATTCCTCCTTACTTGGAAATTAG 2601 0.4725 MMLPFYCHQNSLLLSHFLTLKNTNTFSALSQPPQKTETMPLPHTLFFFFLLQHILTFTIATPSTTILEGTTTLRSPNNTFELGIFNLQPSNNFYLSIRYTSLPTQILIWVANRHQPAPSQPNTTLQLTNCHVSLTHPQTSLPLWQTPKSPSFSSCNLQLLETGNLVLLSSENDTVLWQSFDEPTDTWLPGMNLTQTRSLVSWKTKTDPSPGLYSLRLKPPNYGELELVFNGTDSYWSTGNWTGDSFLGIPEMTNPYIYRFHFEKPFTEDASFGFTERTSDSGLLPTRFRLEPQGQVQQYTWWKQAGTWNRFWFKPELCQVRGLCGSFGVCNGQESSYCGCVHGFVPSDEVGWRNGDYSLGCVREKKDSCVKRDDFQDMGLVKFGYGSMNISKAKSLSFCESKCLGSCECVGLTFSDGSGLCRNFYGSVFDFQNVSSVGDGGGVLRVRVPRERNGEVLDRTVLIVAVLVGSAAVSGVVVVTLLVLVKKKRKKELEEEDGFVQMLNLRVFSYKELQLATRGFSEKVGHGGFGTVFQGELSDSTLVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENAHRLLVYEFMQNGALSAYLRKEGPSLSWDVRFRVAVGTAKGIAYLHEECRNCIIHCDIKPENILLDSDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLLELIGGRRNVEAPPSAGGCDRDKESDCETGERWFFPPWAAQQIIDDNVADVMDKKLGDVYNIEEARRVGLVAVWCIQDDEAMRPTMGMVVKMLEGLVEVSVPPPPKLLQALVTGESFHGVKADSGYEIATGGSLSGGNLEVSTADSESYVGDAYSSLLGN 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271865g00019 866 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 241 IPR036426 -
Stsc271865g00019 866 SUPERFAMILY Protein kinase-like (PK-like) 500 800 IPR011009 -
Stsc271865g00019 866 Gene3D - 58 180 IPR036426 -
Stsc271865g00019 866 Pfam S-locus glycoprotein domain 236 347 IPR000858 GO:0048544
Stsc271865g00019 866 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Stsc271865g00019 866 ProSiteProfiles Bulb-type lectin domain profile. 58 180 IPR001480 -
Stsc271865g00019 866 Gene3D Phosphorylase Kinase; domain 1 480 592 - -
Stsc271865g00019 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Stsc271865g00019 866 Pfam Protein kinase domain 521 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271865g00019 866 Pfam D-mannose binding lectin 108 201 IPR001480 -
Stsc271865g00019 866 Gene3D Transferase(Phosphotransferase) domain 1 593 807 - -
Stsc271865g00019 866 FunFam S-receptor-like kinase 5 593 808 - -
Stsc271865g00019 866 PANTHER OS07G0415500 PROTEIN 43 812 - -
Stsc271865g00019 866 CDD B_lectin 66 183 IPR001480 -
Stsc271865g00019 866 ProSiteProfiles PAN/Apple domain profile. 369 448 IPR003609 -
Stsc271865g00019 866 SMART blect_4 64 183 IPR001480 -
Stsc271865g00019 866 ProSiteProfiles Protein kinase domain profile. 518 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271865g00019 866 FunFam Receptor-like protein kinase 4 481 592 - -
Stsc271865g00019 866 SMART serkin_6 518 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271865g00019 866 PIRSF SRK 34 851 IPR024171 GO:0004674
Stsc271865g00019 866 CDD PAN_AP_plant 359 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271865g00019 Stsc-Chr271865 103787 106387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271865g00019 508 809 Receptor kinase-like Gene Family AT5G20050 44.762 3.55e-78 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc271865g00019 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271865g00019 - - gmx:100778917 1114.75