Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271865g00012 ATGGAGATATTGATGAATAGTGGTATTCTTGAGAATCTGAGTAACGTAGTAGACTTATCAAATCGTAATGAATTAGAAATTAAGAAGACGCTGAAGGATAATGTCTTTGCCAATGATCATGAAAAGTATATTGAATTCGTTAAAAAGCTGTTCGAGTTCAAGTCTCGAAGAATTGATGGAGCAAATTTCTTAACGACAGTGGAGGAGCTACTTGCTGGACATACAGATCTAATATTGAGGTTCAAAACCTTCGCAATCAGATATGACGAACAATTTTCAAATAATAAACAAGTATTAAACAACATTAAGATACGGTTAGGAGGTAATAAAGATATTTATAAATCAGTTTTTCAACATGCGTCTCTCTGTGTGTGTCACGAGCAGGCCATGAAGGCCTGTTTTTGGAGTTCGTCAATTTTGGTGTCCAACTTTTTAGGGTTCGTATCTGAGGACTTGTTAAATGCTCAAGGGCTTTAG 477 0.3564 MEILMNSGILENLSNVVDLSNRNELEIKKTLKDNVFANDHEKYIEFVKKLFEFKSRRIDGANFLTTVEELLAGHTDLILRFKTFAIRYDEQFSNNKQVLNNIKIRLGGNKDIYKSVFQHASLCVCHEQAMKACFWSSSILVSNFLGFVSEDLLNAQGL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271865g00012 158 Gene3D Paired amphipathic helix 27 85 IPR036600 GO:0006355
Stsc271865g00012 158 PANTHER SIN3B-RELATED 25 117 IPR039774 GO:0003714
Stsc271865g00012 158 SUPERFAMILY PAH2 domain 34 84 IPR036600 GO:0006355
Stsc271865g00012 158 ProSiteProfiles PAH domain profile. 17 88 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271865g00012 Stsc-Chr271865 55006 55805 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc271865g00012 PAH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271865g00012 - K14555 tpra:123906915 62.003