Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271864g00045 ATGAGTCCGTCCAGTAAGAACGTGGCAAACGCCGTCGGTGGAAAAACCGCAAGAGCATGTGATAGCTGCATAACAAAGCGAGCAAGATGGTACTGTGCTGCCGACGATGCTTTCCTCTGCCAAGCTTGCGACTCTTCTGTTCACTCTGCTAACCCACTTGCTCGCAGGCATGAGAGGCTGCGTTTGAAATCTGCCTCCTCTTTCTCTTCCAAGGATTCAGAACCCATCAACGGTACCTCTGCTCCCACCTGGCACCATGGCTTTACAAAGAAAGCTCGGACGCCCCGGAGTAATCGTAATAATTCATCTTCTTCAACTCGTCGAACATCCAAGTCTTCTTGGAGCCGCAACAACCAGCACCCTTTTCATCTGGTTCCGGAAGAGGGAGAGGGCTCGGATGAAGTGAATTCCCATGAAGAGAACGAGGAGCAGCTTCTTTATAGGGTTCCTGTATTTGATCCATTTGTAGCTGAGCTAGGCAGCAGTAGTCCTGCTGAGAATAACAAGAAGGAGAGTGAAGAGAGCAAGGGATCTTTGGGTTTTCACTTGCATGGGTTTCTACCATCGGAAGCTGAGCTTGCTGAGTTCGCGGCTGATGTGGAGAGCTTGTTGGGTAGGGGAATGGAGAACGAGTGCATTGGGATGGAAGAGCTTGGGCTCATTGATAACAAGGAGGAGGAATCTTGGGAGTGTTCTGTCGGCAGTGGGAATAATGATGATAATAAGGCAGTGAAGGTGGAAATGGAACAGGAACATATGGATGCTACTTCTAGTGGTTGCAAGCTTGAGGAGGGAGATAATCAGGTGGTGATGGAGATTGGAAGAGAAGGGACGTTTGAGTTGAGCTTTGACTATGAAGAGATAGATAAGGAGAAGGTCAAAGAAAACGATGAAGATGCAATTAATGATAAGAAGAAGAGGAAGATATTGCTCCAGCTGGATTACGAGGGAGTAATCAATGCGTGGGGTGGTACCCATAAATCACCGTGGACTACCGGTCAAAAACCAAACTTGGATCTCCATGACTGCTGGCCTCATACCATGGCAACAGGGGGAACAGAGGTTCATCATGGTTATGGTGAATTGATTGGATTGGGGTGTAACCCATCATCACTAATGTTGGGAGACGGGGGAAGAGAGGCAAGAGTGTCAAGGTACAGAGAGAAGCGCCGAACAAGGTTGTTCTCCAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCTGAGAAGAGGCCCAGAATGAAGGGGAGATTCGTCAAGAGAGCTTCCTTTGCCGCACCACCAACAGTACCGCCATTTCCCTTGATTGCTAAATAA 1317 0.4814 MSPSSKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERLRLKSASSFSSKDSEPINGTSAPTWHHGFTKKARTPRSNRNNSSSSTRRTSKSSWSRNNQHPFHLVPEEGEGSDEVNSHEENEEQLLYRVPVFDPFVAELGSSSPAENNKKESEESKGSLGFHLHGFLPSEAELAEFAADVESLLGRGMENECIGMEELGLIDNKEEESWECSVGSGNNDDNKAVKVEMEQEHMDATSSGCKLEEGDNQVVMEIGREGTFELSFDYEEIDKEKVKENDEDAINDKKKRKILLQLDYEGVINAWGGTHKSPWTTGQKPNLDLHDCWPHTMATGGTEVHHGYGELIGLGCNPSSLMLGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPPTVPPFPLIAK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271864g00045 438 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 10 423 - -
Stsc271864g00045 438 MobiDBLite consensus disorder prediction 66 84 - -
Stsc271864g00045 438 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Stsc271864g00045 438 MobiDBLite consensus disorder prediction 64 141 - -
Stsc271864g00045 438 Pfam B-box zinc finger 17 59 IPR000315 GO:0008270
Stsc271864g00045 438 CDD Bbox1_BBX-like 19 62 - -
Stsc271864g00045 438 MobiDBLite consensus disorder prediction 126 141 - -
Stsc271864g00045 438 Pfam CCT motif 379 421 IPR010402 GO:0005515
Stsc271864g00045 438 ProSiteProfiles CCT domain profile. 379 421 IPR010402 GO:0005515
Stsc271864g00045 438 MobiDBLite consensus disorder prediction 94 120 - -
Stsc271864g00045 438 SMART bboxneu5 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271864g00045 Stsc-Chr271864 408352 409800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271864g00045 6 421 C2C2-CO-like Transcription Factor Family AT1G25440 46.742 2.69e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc271864g00045 CCT 1.5e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271864g00045 - - gmx:100782921 445.662