Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271864g00022 ATGGAAAACCAGCTTGAATCACAACCACCACCACCACACCCCACGCGCTTAAAGCTATTTGGCTTCAGCGTCCATGAAGACTCCACCATGGAAGAAGACTTACTACTCATGCATGAAGACGTAGCAGACTCAACGACAACCAAGCCATCACCTTCTTCCACCTCCCCCTCTAGGTCGCCGGATTCCGCCGGACCTGCTGGAGGAGCCAGCAGCGGCGGTTTTGCGCCCTCCTCTTCCGGCGGGGAGCGGAAATACGAGTGCCAGTACTGTTGCAGAGAGTTCGCAAATTCACAAGCACTTGGTGGGCACCAAAACGCGCACAAGAAAGAGCGTCAGCAGCTCAAGCGAGCACAGTTACAAGCCACACGAAACGCCGCCGCCGTTTCCTTCATCAGAAACCCGATCATCTCCGCCTTCGCACCACCGCCTCACCTGCTTGCTCCGCCGGGGTCCGTGGTGATGCCGGCCCCACCTCCCTCGTGGATGTACATGCCGCAGCGCGCGGCTCCTCCTCCGTTCCACGTGTCAGTGTCTCACGGGTGCGTGTTCCCTTCTGGGAACAGCAGTAGTAACAATAACAATAGCAACTACAGTAACGGTAATTGTAACATTAAAAATGGGGGTGTAGGGTTCCCCTATGGTGGCGGTGTAGGGGAACCGTCAAGTGCATTGTCAACGATGATGGGGTCGCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCTCTTTGAGTAG 795 0.5019 MENQLESQPPPPHPTRLKLFGFSVHEDSTMEEDLLLMHEDVADSTTTKPSPSSTSPSRSPDSAGPAGGASSGGFAPSSSGGERKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAAVSFIRNPIISAFAPPPHLLAPPGSVVMPAPPPSWMYMPQRAAPPPFHVSVSHGCVFPSGNSSSNNNNSNYSNGNCNIKNGGVGFPYGGGVGEPSSALSTMMGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALFE 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271864g00022 264 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Stsc271864g00022 264 MobiDBLite consensus disorder prediction 25 39 - -
Stsc271864g00022 264 Gene3D Classic Zinc Finger 74 133 - -
Stsc271864g00022 264 FunFam Zinc finger protein 6 75 136 - -
Stsc271864g00022 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Stsc271864g00022 264 MobiDBLite consensus disorder prediction 43 61 - -
Stsc271864g00022 264 MobiDBLite consensus disorder prediction 1 78 - -
Stsc271864g00022 264 PANTHER ZINC FINGER PROTEIN 5 10 190 IPR044299 GO:0010090
Stsc271864g00022 264 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271864g00022 Stsc-Chr271864 123201 124586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271864g00022 15 210 C2H2 Transcription Factor Family AT1G68360 50.242 7.24e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271864g00022 - - gmx:100811796 230.72