Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271864g00020 ATGGGGATGGGTTCAAAAATGGAAGGACCGTCTGCCCCAGCAAATCGACGTGACCCTTATGAGGTGTTGTCTGTCTCAAGGGACTCTTCCGATCAAGAAATTAAAACTGCTTACAGAAAGCTAGCTCTCAAGTATCACCCTGACAAAAATGCCAGCAATCCTGAAGCTTCAGAGCTATTTAAAGAGGTTGCTTATTCTTATAGTATCTTGTCCGACCCGGAGAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATTGACTTGTCTAATCTAGGGACAGTCAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCTATCAAGACAACCATTTCAGCTAATGTTCTTGAGGAAGCTCTGAATGGGACAGTTACTGTCAGACCGCTTCCTATTGGAACATCAGTGAGCGGAAAGGTAGAGAAGCAATGCGCTCATTTTTTTGGTGTAACAATAAATGAGCAACAAGCTGAGTCAGGAATTGTAATAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTACTTTACTTTGAACAAGATGCAAATGGTGGCTATGGTTTAGCACTGCAGGAAGATAGTGAGAAAACTGGCAAGGTGACATCTGCTGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACCATGAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGGCTTTCTTTAAGAGGTTGGAAGGTCTTCAACCCTGGGATAACTTTTTTAAGACTGCTAGCTATACAATTGAGGCAGTATGTGCAAAATCATATGAAGATACTACCCAGAAACTTAAGGACATTGAGGCTCAGATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAAGCAGAATATAGAAAGGCATTGGCGCGCTACCAGGAAGTGACAGAGAGATACGCAAAAGAAAAGCAATCTGTAGATGAGCTTCTGAAACAAAGGGACGGCATCCATTCATCCTTCACCATCGTCAAATCAACCAATACTATTGGGACTGCTAGTAACTTAAGCAATGGAAGCTCTAGCAAAATGTCTGGTGATGAATCCAAAGGTGATAGCCCCGGGGAAGACGGAGGGTCGGATGGGAAGGACAAATCAGGCAAGAAGAAGTGGTTTAACCTGAATATTAAGGGATCTGATAAGCGGTTGATATAA 1197 0.4252 MGMGSKMEGPSAPANRRDPYEVLSVSRDSSDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVIRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTMNALAMAKDPEGAFFKRLEGLQPWDNFFKTASYTIEAVCAKSYEDTTQKLKDIEAQILRKRNELRQFEAEYRKALARYQEVTERYAKEKQSVDELLKQRDGIHSSFTIVKSTNTIGTASNLSNGSSSKMSGDESKGDSPGEDGGSDGKDKSGKKKWFNLNIKGSDKRLI 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271864g00020 398 CDD DnaJ 18 72 IPR001623 -
Stsc271864g00020 398 Coils Coil 272 327 - -
Stsc271864g00020 398 MobiDBLite consensus disorder prediction 346 398 - -
Stsc271864g00020 398 PRINTS DnaJ domain signature 75 94 IPR001623 -
Stsc271864g00020 398 PRINTS DnaJ domain signature 55 75 IPR001623 -
Stsc271864g00020 398 PRINTS DnaJ domain signature 20 38 IPR001623 -
Stsc271864g00020 398 PRINTS DnaJ domain signature 38 53 IPR001623 -
Stsc271864g00020 398 MobiDBLite consensus disorder prediction 363 398 - -
Stsc271864g00020 398 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Stsc271864g00020 398 Pfam DnaJ domain 18 80 IPR001623 -
Stsc271864g00020 398 SUPERFAMILY Chaperone J-domain 14 88 IPR036869 -
Stsc271864g00020 398 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 396 - -
Stsc271864g00020 398 MobiDBLite consensus disorder prediction 1 28 - -
Stsc271864g00020 398 Gene3D DnaJ domain 4 100 IPR036869 -
Stsc271864g00020 398 MobiDBLite consensus disorder prediction 346 362 - -
Stsc271864g00020 398 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Stsc271864g00020 398 SMART dnaj_3 17 75 IPR001623 -
Stsc271864g00020 398 FunFam Chaperone protein dnaJ 16 3 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271864g00020 Stsc-Chr271864 104925 108641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271864g00020 11 90 C2H2 Transcription Factor Family AT1G74250 43.529 1.32e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271864g00020 - - gmx:100811270 676.011