Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271864g00016 ATGGTGGCAGCAACAACTCATCTCGTTGCTCACGCTACCTTCTTCCTCTCTCTGGTTTTCCAAATGCTTCTTCTGGCCAACGGCTCTAACAGTCCAGATATGGAGGCTCTGTTGGCCTTCAAAGCTGCTTCAGACGCCTCGGAGAAGCTCACCAGTTGGAACAACAGCACCAACGCTTGCAGCTGGGACGGCGTCTCTTGCATCAACAACCGAGTCACGCGACTCGTTCTTGAGAACCTCGACCTCCAAGGTTCCATTCAACCCTTAACTTCCCTCACTCAACTCCGAGTTCTCAGCCTCAAGCGAAACCTAAGCAACTTAGTCCACCTTCTCACTCTCCGCCTCGAGGGGAACCGTTTCTCCGGCTACATTCCCGGCGTCAACCTCCCAAACCTGCAAGACTTCAACGTCTCCGGGAACCTCCTCTCCGGCGAGATACCGAAGTCGCTCTCGGCTTTCCCCGTTTCCTCGTTCGGGCAAAACCCTTCTCTATGCGGAGCCCCGATTCAGAACTGCTCCGGAGTCGTGGCTGACCCGACAAAACCCGGATCTGGAGGCGCCATTGCGTCTCCAGTGGTGCCACGTGGCGGCGCCACAACAACGGTGTCATCTTCCCCTAGCTCAATGCCAGCAAATGACGTTAACGCAGCTCCAAAATCCTCGAAAAGGCATGGAAACGGAGCTTCGAAGATAAGCCCGGTGGCACTAATAGCCATAATTGTGGGCGACGTATTTGTACTGGGCATTGTGTCATTGCTTCTATACTGCTACTTCTGGAGGAACTACTCGGCGAAGTTGAAGGAAGGGAAAGGGTCAAAGCTCTTCGAGAGCGAGAAGATTGTGTATTCTTCGAGTCCATTCCCTGCACAAGGAGGAGGAGGAGGAGGGTTTGAGAGGGGGAAAATGGTGTTCTTCGAAGGAGAGAAGAGGTTCGAATTGGAGGACTTGCTTCGAGCGTCTGCTGAGATGCTAGGAAAAGGTGGGTTCGGAACGGCGTACAAAGCGGTTCTTGATGATGGGAACGTTGTTGCGGTGAAGAGGCTGAAAGATGCGCAGATTGGAGGGAAGAGAGAATTCGAGCAGCACATGGAGCTTCTTGGAAGGTTGAGGCACCAAAATATAGTGAGCTTGAGAGCTTACTATTTTGCGAGGGATGAGAAGTTGTTGGTCTATGATTACATGCCCAATGGAAGCTTGTTCTGGCTCCTTCACGGGAACCGAGGACCGGGGAGAACCCCACTGGACTGGACTACTCGGCTCAAGATAGCAGCTGGAGCGGCGCGTGGCGTGGCCTTCATTCACAACTCATGCAAGTCTCTTAGGCTCAACCACGGTAACATCAAATCCACCAACATTCTATTAGACAAGCAAGGAAACGCTCGGGTATCAGATTATGGGCTCTCCGTGTTCGCGGGCCCAGGCCCATCACCATCTGGTGTCAGATCCAACGGCTATCGTGCTCCTGAGGTGTCACCCGACGGTCGAAAACAGTCCCAAAAGTCCGACGTGTACTCGTTCGGTGTATTCTTGCTTGAGTTGCTGACGGGGAAGTGTCCCTCGGCGGTGGAGGGTGGCGGTGGGCCCGCGGTGGACCTGCCCAGGTGGGTCCAGTCCGTTGTGAGGGAAGAGTGGACGGCTGAGGTATTTGATTTGGAGTTGATGAGGTACAAGGACATTGAAGAGGAGATGGTTGGGTTGTTGCAGGTTGCTATGGCGTGCACTGCCCCCACACCTGATCAACGGCCTAGCATGAGCCACGTGGTCAAGATGATCGAGGATTTGCGTGGTGTCCAGGTCTCACCGTGTCATGACACGTTGGACTCTGTGTCTGAGTCACCTTCCGTCTCCGAAGATGCATGTGGTGCTAGTCAGTAA 1875 0.5392 MVAATTHLVAHATFFLSLVFQMLLLANGSNSPDMEALLAFKAASDASEKLTSWNNSTNACSWDGVSCINNRVTRLVLENLDLQGSIQPLTSLTQLRVLSLKRNLSNLVHLLTLRLEGNRFSGYIPGVNLPNLQDFNVSGNLLSGEIPKSLSAFPVSSFGQNPSLCGAPIQNCSGVVADPTKPGSGGAIASPVVPRGGATTTVSSSPSSMPANDVNAAPKSSKRHGNGASKISPVALIAIIVGDVFVLGIVSLLLYCYFWRNYSAKLKEGKGSKLFESEKIVYSSSPFPAQGGGGGGFERGKMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIGGKREFEQHMELLGRLRHQNIVSLRAYYFARDEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLNHGNIKSTNILLDKQGNARVSDYGLSVFAGPGPSPSGVRSNGYRAPEVSPDGRKQSQKSDVYSFGVFLLELLTGKCPSAVEGGGGPAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQVAMACTAPTPDQRPSMSHVVKMIEDLRGVQVSPCHDTLDSVSESPSVSEDACGASQ 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271864g00016 624 MobiDBLite consensus disorder prediction 186 227 - -
Stsc271864g00016 624 Pfam Protein kinase domain 322 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00016 624 FunFam pollen receptor-like kinase 1 291 393 - -
Stsc271864g00016 624 ProSiteProfiles Protein kinase domain profile. 318 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00016 624 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 103 IPR046959 -
Stsc271864g00016 624 Gene3D Ribonuclease Inhibitor 102 174 IPR032675 -
Stsc271864g00016 624 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 394 601 - -
Stsc271864g00016 624 MobiDBLite consensus disorder prediction 473 498 - -
Stsc271864g00016 624 CDD STKc_IRAK 324 594 - -
Stsc271864g00016 624 Gene3D Phosphorylase Kinase; domain 1 299 393 - -
Stsc271864g00016 624 Gene3D Ribonuclease Inhibitor 26 101 IPR032675 -
Stsc271864g00016 624 SUPERFAMILY L domain-like 51 164 - -
Stsc271864g00016 624 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Stsc271864g00016 624 Gene3D Transferase(Phosphotransferase) domain 1 394 608 - -
Stsc271864g00016 624 MobiDBLite consensus disorder prediction 196 215 - -
Stsc271864g00016 624 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Stsc271864g00016 624 SUPERFAMILY Protein kinase-like (PK-like) 322 591 IPR011009 -
Stsc271864g00016 624 MobiDBLite consensus disorder prediction 605 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271864g00016 Stsc-Chr271864 75078 77903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271864g00016 33 623 Receptor kinase-like Gene Family AT1G68400 60.578 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc271864g00016 Pkinase 3.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271864g00016 - - gmx:100779158 930.628