Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271864g00015 ATGGTGTTGGCTTGGTACTTCAGAAGATACTTTTACAATAAAGAAAACCCAACCCACCAAATAATTGAGGCATTCCTGAAAAATCATGGTCACCTTGCAGCTAAAAGGTTCAGTTATTTGGAGGTAAAGAAAGCAACAAACTCCTTCAAAGACAAACTGGGTCAAGGAGGCTATGGTAGTGTATACAAAGGGAAGTTATCTGATGGAACCCTTGTGGCAGTGAAGGTTTTAAGTGAATCAAAAGGTAACGGTGAAGAATTTATCAACGAAGTTGCTAGCATAAGTGTGACTTCTCATGTTAACATAGTTGAATTATTGGGATTCTATTTGGAAGAGACTAAAAGAGCTTTAATATATAAGTATATGCCTAATGGATCAGTTGAAAAATTCATCTATGAAGCCAGAGATTCAAAGAAGTTCAATCCACACTTGACTTGTAAAACAATGTATAAGATTGCAATTGGTGTTGCTCGAGGGTTAGACTATTTGCACAAGGGGTGTAACAGTAAAATTGTGCATTTTGATATCAAACCTCACAATATCTTGTTAGACGNNNNNNNNNNAGACTTCGGGCTTGCAAAAATATGCATGGAAAAAGAAAGCATTCTATCATTAATGATTGCTAGAGGAACTATAGGATATATTGCACCTGAAGTATTCTCAAGAAATTTTGGTGAGGTGTCCCATAAATCTGATGTATATAGTTATGGAATGATGGTCTTAGAAATGATTGGAGAAAGAAAGAATATGAACATTGTAGACGAATCTTCAAGTGAAATATATTTTCCTCATTGGATTTACAAGCGTCTTGAGCAGAACCAAGAAGCTGAATTGAGATGTATCAAGAATGAAATTGATAAAGAGACAATACAAAAGATGATAGTAGTGAGCTTATGGTGCATTCAGACTGATCCATCAAATAGGCCAACAATGAGCAAGGTCGTAGATATGATGGAATCAAGCTTTGAGTCTCTACAAATGCCACCAAAACCTTATCTATGTTCACCTCCTAGATCGCCGCTGCTAGACTCGACAAGTTCATCCCTCTCAAAATTTAAGTCATTATGA 1068 0.3596 MVLAWYFRRYFYNKENPTHQIIEAFLKNHGHLAAKRFSYLEVKKATNSFKDKLGQGGYGSVYKGKLSDGTLVAVKVLSESKGNGEEFINEVASISVTSHVNIVELLGFYLEETKRALIYKYMPNGSVEKFIYEARDSKKFNPHLTCKTMYKIAIGVARGLDYLHKGCNSKIVHFDIKPHNILLDXXXXDFGLAKICMEKESILSLMIARGTIGYIAPEVFSRNFGEVSHKSDVYSYGMMVLEMIGERKNMNIVDESSSEIYFPHWIYKRLEQNQEAELRCIKNEIDKETIQKMIVVSLWCIQTDPSNRPTMSKVVDMMESSFESLQMPPKPYLCSPPRSPLLDSTSSSLSKFKSL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271864g00015 355 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00015 355 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00015 355 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00015 355 MobiDBLite consensus disorder prediction 328 355 - -
Stsc271864g00015 355 MobiDBLite consensus disorder prediction 339 355 - -
Stsc271864g00015 355 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Stsc271864g00015 355 Gene3D Phosphorylase Kinase; domain 1 23 121 - -
Stsc271864g00015 355 FunFam serine/threonine-protein kinase PBS1-like 17 121 - -
Stsc271864g00015 355 SUPERFAMILY Protein kinase-like (PK-like) 31 318 IPR011009 -
Stsc271864g00015 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Stsc271864g00015 355 Coils Coil 271 291 - -
Stsc271864g00015 355 FunFam PR5-like receptor kinase 122 330 - -
Stsc271864g00015 355 Gene3D Transferase(Phosphotransferase) domain 1 122 327 - -
Stsc271864g00015 355 PANTHER RUST RESISTANCE KINASE LR10-RELATED 19 339 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271864g00015 Stsc-Chr271864 69038 72640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271864g00015 10 331 Receptor kinase-like Gene Family AT5G38260 54.217 9.51e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc271864g00015 Pkinase 8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271864g00015 - - psat:127098536 525.013