Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271864g00013 ATGGCTCCCCTTTTTATGTTGAAATCACTGATTCTGTGTGAGTTTGTGTTTATGGTTCATGCCATAGCTAAGAGTGAAAAGTGTCCAACCTCTTTTGAATGTGGAACACTAGGCAACATCAGTTTCCCTTTCACACACTCAAAACGCCATCACTGTGGGGTGGTGGCGATACAAGGCTGCGATGATAAGAGTCCAGATTCCCAGAAATCCATAGTATTAAACACCACACGAAATGGAACGTTTCTTGTTATAAACATAGAGTATAATACCATAACCACCACCGATGTGCTTCTACGTGACGCTTTGAAATCCCAGCATTGCAGAGCCTTCAGCAACAATTTGAGTCTACCACAGATGCCCAGGTCACCCTTAGGCTATTCATATGCAAAATACAATACAACACTCTTCACATGCCCTTCCAATAATCTGAGCCTTCCTCACTCATTTTATAAGTATACAAACTGCACTAACTACCACATCTACTATGATGACAATCATAAGGCCGGAGATCCTCCTGACTTTCCGTGGCCAAAGTCTTTAGCAGCATGTTCCAAGTTCCAGTTTGCATTAAAAGATGAAACAAATGATAGAGACCCCTTCTCATTTGTGTCTGATCAAAACGTGATGGAAGTACAATTATCCGATGAATGTAAAAAGTGCATGGATCACGGAAGAGGCCAATGTCAACTTGACACCCAAGGAAACTTCTGCTGCCTCACAGTCTCAGGCCATAAAGGTTGGATCCTGAAGATGGGACTAGTACTCGTTGCTACAATTCTTCTAGTGCTAGTAGTAATGGTCACGCTCTACTGCACAAGATGGAACAAGAAAAATCCTAAACAGACGCTGGGGATTAATTCCTTTTTGGAGAAACACGGGTCCCTTCAAATAAAGAGATATACTTATTCAGAGATGAAGAAGGTGACCAACTCCTTCAGAGATAAACTAGGCCAAGGAGGATTTGGCAGTGTATACAAGGGACAATTACAGGATGGACGCCATGTTGCAGTGAAGATCCTTAGTGAACTCAAAGGTGATGGTGAGGACTTCATCAATGAAGTTGCGAGTATGAGCAGAACCTCTCATGTTAACATTATTGCTCTTCTTGGCTTCTGCTTTCAAGGTTCCAAACGAGCTTTGGTTTATGAATTTATGCCCAATGGCTCGCTTGAGAAGTTAATCTATGATGAAAGTTCTATGATAGGGGATCGCCGATTGGATTGTCAAACTTTATATGATATTGCAATTGGTGTTGCCAGAGGACTTGAATATTTGCACAAGGGCTGCTATATTGCCCCTGAGGTATTTTCTAGGAATTTTGGTGCAGTATCTCATAAGTCAGATGTTTATAGTTATGGAATGATGGTGTTAGAAATGGTTGGGCGAAGAAGGAATCTCAAAGTTGAAGTTGATGCATCGAGTGAGATATATTTCCCTCACTGGATATACAATCGGCTTGTGTCAAATCAGGAGCTTGATCTGCAAAATATAAGAAATGAATGTGATAATGAGATGGTCAGAAAGATGACAATAGTGAGCTTATGGTGCATCCAAACCAACCCTTCAACTCGACCATCAATCAGTAAAGTGGTGGAAATGCTGGAAGGAAAAGCTGAGCTGTTGCAGTTACCTCCAAAACCATTTTGGTTTTCTCCTTCAACCTCTCCCTGA 1671 0.4153 MAPLFMLKSLILCEFVFMVHAIAKSEKCPTSFECGTLGNISFPFTHSKRHHCGVVAIQGCDDKSPDSQKSIVLNTTRNGTFLVINIEYNTITTTDVLLRDALKSQHCRAFSNNLSLPQMPRSPLGYSYAKYNTTLFTCPSNNLSLPHSFYKYTNCTNYHIYYDDNHKAGDPPDFPWPKSLAACSKFQFALKDETNDRDPFSFVSDQNVMEVQLSDECKKCMDHGRGQCQLDTQGNFCCLTVSGHKGWILKMGLVLVATILLVLVVMVTLYCTRWNKKNPKQTLGINSFLEKHGSLQIKRYTYSEMKKVTNSFRDKLGQGGFGSVYKGQLQDGRHVAVKILSELKGDGEDFINEVASMSRTSHVNIIALLGFCFQGSKRALVYEFMPNGSLEKLIYDESSMIGDRRLDCQTLYDIAIGVARGLEYLHKGCYIAPEVFSRNFGAVSHKSDVYSYGMMVLEMVGRRRNLKVEVDASSEIYFPHWIYNRLVSNQELDLQNIRNECDNEMVRKMTIVSLWCIQTNPSTRPSISKVVEMLEGKAELLQLPPKPFWFSPSTSP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271864g00013 556 SUPERFAMILY Protein kinase-like (PK-like) 292 535 IPR011009 -
Stsc271864g00013 556 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Stsc271864g00013 556 Pfam Protein tyrosine and serine/threonine kinase 312 439 IPR001245 GO:0004672|GO:0006468
Stsc271864g00013 556 FunFam serine/threonine-protein kinase PBS1-like 281 384 - -
Stsc271864g00013 556 ProSiteProfiles Protein kinase domain profile. 310 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00013 556 Gene3D Transferase(Phosphotransferase) domain 1 430 546 - -
Stsc271864g00013 556 PANTHER RUST RESISTANCE KINASE LR10-RELATED 285 429 IPR045874 GO:0004672
Stsc271864g00013 556 Gene3D Transferase(Phosphotransferase) domain 1 304 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271864g00013 Stsc-Chr271864 62999 65103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271864g00013 252 548 Receptor kinase-like Gene Family AT4G18250 43.380 3.25e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc271864g00013 PK_Tyr_Ser-Thr 8.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271864g00013 - - gmx:100786495 563.148