Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271864g00012 ATGGCATTACTTGGCGTTCTAAAGTCAATTACCTATGCAGTTGCTACAGTTCTTCTCGTGCTAGTAGTAATGGTCACGCTCTACTACACAAGATGGAAGAAGAAAAATCCTAAACCCACGCTGGGGATTAATTCCTTTTTAAAGAAACACGGCCCCCTTCAAATAAAGAGATATACTTATTCTGAGATGAAGAAGGTGACCAACTCTTTCAGAGATAAACTAGGCCAAGGAGGATTTGGCAGTGTATACAAAGGACAATTGCAGGATGGACGCCATGTTGCAGTGAAGATCCTTAGTGAACTCAAAGGTGATGGTGACGATTTCATCAATGAAGTTGCAAGTATTAGCAGAACTTCTCATGTTAACATTGTCAATCTTGTGGGATTCTGTTTCCAAGGTTCAAAAAGGGCTCTAATCTATGAATTTATGCCTAATGGATCCCTTGAAAAGTTCGTATGTGAGGAAAATACAACTGCAGCTGGTCGCCAATTGGATTGCTCAAGTCTGTATGAGATTGCAGTTGGTGTGGCACGCGGACTAAATTATTTGCATCGAGGCTGCAATGCTAGAATCTTGCATTTCGACATAAAACCTCATAACATACTACTTGATGAGGATTTTTGTCCAAAGATCTCAGATTTTGGACTCGCTAAAATATGTCCAAGAAAAGAGAGTATAGTTTCCATGTCGTGTGCAAGGGGAACTATCGGATTTATTGCTCCAGAGTTGTTTTCAAGGAATTTTGGTGGAATATCTCACAAGGCAGATGTGTATAGTTACGGAATGATGGTTTTGGAAATGGTTGGAGGAAGAAACAATAGAAATGTCCAAGTTGATTGTTCTAGTGAGCTGTATTTTCCTCATTGGATATACAAGCGACTTGAACTAGATGAAGAGTTAGGATTGAGGTGTATCAGAAAGGAAAGTGATAGGGAAATAGTGAGAAAGATGACACTGGTGAGCTTGTGGTGCATACAGACAAATCCTTCATCTCGTCCATCAATGAGTAAGGTGGTGGAGATGCTTGAAGGAAGCTTGGAGTCATTTGAATTGCCGCCTAGGCCCTTTTTAAGTTCTTCCCCAACATCTCCTATTCATTACTCAAGTCACACATCTGAAAGTTTGTAG 1128 0.4034 MALLGVLKSITYAVATVLLVLVVMVTLYYTRWKKKNPKPTLGINSFLKKHGPLQIKRYTYSEMKKVTNSFRDKLGQGGFGSVYKGQLQDGRHVAVKILSELKGDGDDFINEVASISRTSHVNIVNLVGFCFQGSKRALIYEFMPNGSLEKFVCEENTTAAGRQLDCSSLYEIAVGVARGLNYLHRGCNARILHFDIKPHNILLDEDFCPKISDFGLAKICPRKESIVSMSCARGTIGFIAPELFSRNFGGISHKADVYSYGMMVLEMVGGRNNRNVQVDCSSELYFPHWIYKRLELDEELGLRCIRKESDREIVRKMTLVSLWCIQTNPSSRPSMSKVVEMLEGSLESFELPPRPFLSSSPTSPIHYSSHTSESL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271864g00012 375 FunFam serine/threonine-protein kinase PBS1-like 44 142 - -
Stsc271864g00012 375 Pfam Protein kinase domain 72 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00012 375 ProSiteProfiles Protein kinase domain profile. 68 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00012 375 SMART serkin_6 68 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00012 375 MobiDBLite consensus disorder prediction 352 375 - -
Stsc271864g00012 375 Gene3D Phosphorylase Kinase; domain 1 46 142 - -
Stsc271864g00012 375 Gene3D Transferase(Phosphotransferase) domain 1 143 350 - -
Stsc271864g00012 375 FunFam PR5-like receptor kinase 143 353 - -
Stsc271864g00012 375 SUPERFAMILY Protein kinase-like (PK-like) 50 343 IPR011009 -
Stsc271864g00012 375 PANTHER RUST RESISTANCE KINASE LR10-RELATED 45 362 IPR045874 GO:0004672
Stsc271864g00012 375 MobiDBLite consensus disorder prediction 360 375 - -
Stsc271864g00012 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Stsc271864g00012 375 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271864g00012 Stsc-Chr271864 61151 62278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271864g00012 7 358 Receptor kinase-like Gene Family AT4G18250 53.889 1.21e-132 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc271864g00012 Pkinase 9.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271864g00012 - - ahf:112712060 520.776