Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271864g00007 ATGATAGCACTCGCACTAGGTTTAGGTCTTGGTCCTTGGATCATAGTTGGGTTCATCCTCATTTTAAGGAACCAGAAACCGAAGCAGAGTACTGCACACGTCCAACTCCAATCAACAATGGCTTCTGCTGATTCCAGCCAAAGTCCTGATGTACAGACGGACAGGATCTTCTTTGGGGTGCCGATATACTCTTATAATGAGCTTCAAGAAGCAACAAACAACTTTGACAACATTAGAAAACTGGGAGAGGGAGGCTTTGGCACTGTTTACTATGGAAAACTTGAAGATGGAAGAGAAGTAGCAGTCAAACACCTATTTGATCACAACTACAGGAGAGTGGAGCAGTTTATGAATGAGATTGAGATCCTTACTCGCTTGCGCCACCGAAATCTTGTGTCCCTCTATGGCTGCACTTCACGTCACAGCCATGAGCTACTTCTTGTATATGAATACATTCCAAATGGAACGGTTGCTTCCCATCTCCATGGTAGTTTAGCAAGGGCTGGTTTACTCACTTGGCCTATTCGAATGCAAATAGCCATAGAGGCTGCTACTGCATTGGCCTTTCTCCATGCTTCAGATATCATCCACCGTGATGTGAAAACCAACAACATCCTACTTGACATTAATTTTTCAGTTAAGGTAGCAGACTTTGGTCTTTCAAGACTGTTCCCAAACGATGTCACCCATGTCTCAACGGCTCCACAAGGAAGTCCTGGTTACCTTGACCCTGAATATTTTCAGTGCTACCAACTCACTGCTAAGAGTGATGTATATAGTTTTGGGGTTGTGCTCATGGAGCTGATATCATCCATGCCAGCAGTTAATCCAAACAGGGAAAGAGATGAAATTAACTTGGCGAATCTAGCCAGAAAGAAGATTCAGAAGGGTGAGTTGAGCGAGCTGGTGGACTCATCTCTTGGTTTTGATACAAACCAAGAAGTTAAAAGGAAGATAATTATGGTGGCAGAATTGGCTTTCCAGTGTGTGCAAGTGGACAAAGAGCTAAGACCTTCTATGGATGGAGTTCTGAATGCACTCAAGAAAATTGGAAGTGCGAATTCAGAGCCTGAGCATGTAGAGAAAGGAGATGAAGGCACTGTGATCTTACACAGTGAAGAATTAAATCCACCATCATTATCAGGGTCAAAGGATTGGAATCAAGTTAGATTCTTAATGACAGAGAAGTTAAAGTCTTCACCAAATTCCTTGACTGAGAAATGGTCAAGTGAATCTACTACGCCTAATGCCAGTGCTTAG 1260 0.4302 MIALALGLGLGPWIIVGFILILRNQKPKQSTAHVQLQSTMASADSSQSPDVQTDRIFFGVPIYSYNELQEATNNFDNIRKLGEGGFGTVYYGKLEDGREVAVKHLFDHNYRRVEQFMNEIEILTRLRHRNLVSLYGCTSRHSHELLLVYEYIPNGTVASHLHGSLARAGLLTWPIRMQIAIEAATALAFLHASDIIHRDVKTNNILLDINFSVKVADFGLSRLFPNDVTHVSTAPQGSPGYLDPEYFQCYQLTAKSDVYSFGVVLMELISSMPAVNPNRERDEINLANLARKKIQKGELSELVDSSLGFDTNQEVKRKIIMVAELAFQCVQVDKELRPSMDGVLNALKKIGSANSEPEHVEKGDEGTVILHSEELNPPSLSGSKDWNQVRFLMTEKLKSSPNSLTEKWSSESTTPNASA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271864g00007 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Stsc271864g00007 419 Pfam Protein tyrosine and serine/threonine kinase 78 346 IPR001245 GO:0004672|GO:0006468
Stsc271864g00007 419 Gene3D Transferase(Phosphotransferase) domain 1 152 362 - -
Stsc271864g00007 419 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Stsc271864g00007 419 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 413 IPR044652 GO:0004672
Stsc271864g00007 419 FunFam receptor-like protein kinase FERONIA 37 151 - -
Stsc271864g00007 419 ProSiteProfiles Protein kinase domain profile. 75 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00007 419 FunFam Wall-associated receptor kinase-like 20 152 360 - -
Stsc271864g00007 419 SMART serkin_6 75 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00007 419 SUPERFAMILY Protein kinase-like (PK-like) 58 350 IPR011009 -
Stsc271864g00007 419 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Stsc271864g00007 419 MobiDBLite consensus disorder prediction 398 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271864g00007 Stsc-Chr271864 34443 36992 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271864g00007 4 419 Receptor kinase-like Gene Family AT1G25390 58.156 1.24e-163 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc271864g00007 PK_Tyr_Ser-Thr 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271864g00007 - - gmx:100789176 598.586