Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271864g00001 ATGGCCGATGAGAATGTAAAGTGTCCATCCTCATTTGAGTGTGGGAGTCTAGGGACCATCAGGTTTCCTTTCACAAACCAAAACCACCCACGCTGCGGTGTATTGGCAATCCATGGCTGTGATGATCCAAACCCAGATTCTCCCAAATTCATCAAACTAACCAACACATCTCCAAGGTTTGATGTTTTATACGTGGAACCTCTTACCATAACCATCAAAGATACTAATATAACTCACTATTTGGGAACCAAAAGTTGCAAAACATTCAGCAACAACATAAGTGTTCCTCAGAGTCCCAGTACCTCTCCTTTAGGGTCTTTGTACATGAAATATAATATAACACTCTTCAGATGCAACAAGTCCCTCACCCTCAACCTTCCCAGGCGTTTTCATAACTATAGAGAGTGTCCAGAGTACAATATCTACTATGGCCCACCTAACGAGGATATTCCGAAGGGATACCGGTGGCCAACCAATTTAACAGAATGTTCCAATATTCAGTTACCAATAAGAGACGAGTCAGATACTAATGACCCATTTTCGTTTCTATATAATGAGATGCAATTGGAAGTACTATTATCTGAAGACTGTGCCAAGTGTGTTCAGCACCAAACAGGTCAATGTCAACTTGACACCCAAGGCAAATTCTATTGCGCCAAAGGTATTGCACTCCCACTCTTTATTACAATTGGGTTGTTGCTGATTCTGTGGCGTTGCAAAGCCAAATACGGTGTTGTTTTTTACTCAAAACCAGAACCACAGAGTTGCAGTATCTACTTTGGGGTCCCTGTTTTTTCCTATAAGGATCTTCAAGTCGCTACAAAATGTTTTGACTCTTGTAGAGTTCTTGGTGATGGAGGCTTTGGCACTGTTTACTATGGAAAACTCAAAGATGGACGTGAAGTTGCCATCAAGCACTTATATGAGCACAACCGTCGGAGATTAGAACAATTCATGAATGAAGTTAAGATCCTAACACGTCTGCGACATGCAAATCTTGTGTCCCTCTATGGCTGCACTTCACATCACAGCCATGAATTGTTGCTTGTTTATGAATACATTTCAAATGGCACTTTAGCTAGTCATCTGCACCATGGATCATCAAGGTCTAGCTTCCTGCCTTGGCCTATTAGAATGAAAGTTGCCATAGAAACTGCAACTGCATTGGCTTATCTCCATGCTTCAGACATCATTCACCGCGATGTGAAGACCAACAACATTCTTCTAGACAACAGCTTCTGTGTTAAGGTTGCGGATTTTGGGATGTCAAGATTGTTTCCGAACGATGTGACACATGTATCCACAGCTCCTCAAGGCACCCCTGGCTATCTTGATCCAGAATATCACCAATACTACCAGCTTACCAGCAAGAGTGATGTGTATAGTTTCGGGGTTGTGCTCGTTGAGCTAATCTCTTCTAAGCCTGCAGTTGATATGAGTAGGCATAAGGATGAGATTAGCTTGGCGGATCTAGCTATAAACAAGATTAGAAAGGGTGAAATTAGAGAGCTTGTTGATCCTTTCCTTGGGTTTGAGTCAGATGGTGGATTTAGAAGGGAAATAGTTTTGGTGGCAGAATTGGCATTTCAGTGTTTGCAAAGGGACAGAGAATTGAGGCCGTCCATGGAAGAGGTGTTGGAGGCACTGAGAAGAACAGAGAGTGGGAAGGAAGAGGGTGATGAGGTAGTGTTACATGATGATATGAAGGCAACACATTCGCCTAACGCAGTGACTGATAAGTGGGATAGTGAATCATCTACTACACCCAATATTAGTGTTCAATCAACCAACCAATCTAATGTTGATGACTGA 1812 0.4233 MADENVKCPSSFECGSLGTIRFPFTNQNHPRCGVLAIHGCDDPNPDSPKFIKLTNTSPRFDVLYVEPLTITIKDTNITHYLGTKSCKTFSNNISVPQSPSTSPLGSLYMKYNITLFRCNKSLTLNLPRRFHNYRECPEYNIYYGPPNEDIPKGYRWPTNLTECSNIQLPIRDESDTNDPFSFLYNEMQLEVLLSEDCAKCVQHQTGQCQLDTQGKFYCAKGIALPLFITIGLLLILWRCKAKYGVVFYSKPEPQSCSIYFGVPVFSYKDLQVATKCFDSCRVLGDGGFGTVYYGKLKDGREVAIKHLYEHNRRRLEQFMNEVKILTRLRHANLVSLYGCTSHHSHELLLVYEYISNGTLASHLHHGSSRSSFLPWPIRMKVAIETATALAYLHASDIIHRDVKTNNILLDNSFCVKVADFGMSRLFPNDVTHVSTAPQGTPGYLDPEYHQYYQLTSKSDVYSFGVVLVELISSKPAVDMSRHKDEISLADLAINKIRKGEIRELVDPFLGFESDGGFRREIVLVAELAFQCLQRDRELRPSMEEVLEALRRTESGKEEGDEVVLHDDMKATHSPNAVTDKWDSESSTTPNISVQSTNQSNVDD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271864g00001 603 MobiDBLite consensus disorder prediction 550 568 - -
Stsc271864g00001 603 SMART serkin_6 277 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00001 603 MobiDBLite consensus disorder prediction 550 603 - -
Stsc271864g00001 603 Pfam Protein kinase domain 280 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00001 603 Gene3D Phosphorylase Kinase; domain 1 251 353 - -
Stsc271864g00001 603 ProSiteProfiles Protein kinase domain profile. 277 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271864g00001 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Stsc271864g00001 603 FunFam Wall-associated receptor kinase-like 20 354 561 - -
Stsc271864g00001 603 MobiDBLite consensus disorder prediction 576 603 - -
Stsc271864g00001 603 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 585 IPR044652 GO:0004672
Stsc271864g00001 603 ProSitePatterns Protein kinases ATP-binding region signature. 283 305 IPR017441 GO:0005524
Stsc271864g00001 603 Gene3D Transferase(Phosphotransferase) domain 1 354 565 - -
Stsc271864g00001 603 SUPERFAMILY Protein kinase-like (PK-like) 254 549 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271864g00001 Stsc-Chr271864 1667 4222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271864g00001 12 593 Receptor kinase-like Gene Family AT1G25390 44.904 6.49e-156 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc271864g00001 Pkinase 6.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271864g00001 - - aprc:113871893 750.74