Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271863g00055 ATGGCATTATCAAATTCCAATGTCTTAGGCTGGGCTGCAACAGACACCTCTGGCCATCTCTCTCCCTTTCATTTCACATTAAGGGAAAATGAAGCTGATGACGTCACTATTAAAATCCTCTACTGCGGGGTTTGCCATACCGATCTCCACACAATCAAGAATGAATGGGGTGTCACTAATTATCCTGTTGTCCCTGGGCATGAAATTGTTGGTGTTGTGACGAAGGTTGGGAGTAATGTGAAAAAATTTATGAAGGGTCAAAGAGTTGGAGTTGGTGTAATGGTGGACTCATGTCAGGAATGTGAGTGTTGCGAGCAAGATCTTGAGAATCACTGTCTTGAACATGTGTTGACCTATAACTCTCCTTATAAAGGGACACAAACCCGCGGTGGCTACTCCGATTTAATAGTTGTACACCAGCGCTATGTGCTTTATTTTCCCAACGACCTACCCCTTGCTGCGGGTGCCCCGCTTCTGTGTGCTGAGATCACTGTGTATAGTCCAATGAAGTATTATGGGATGACAGAGCCAGGCAAGCATTTGGGAGTGGCTGGGCTTGGCGGCTTAGGCCACCTTGCTATCAAATTTGGCAAAGCATTTGGTCTCAAAGTTACTGTCATTAGTAGCTCTCCCAACAAGGAAGCTGAAGCCATTCACAATCTTGGTGCTGATTCTTTCATTCTTTCCTCTGATCCTGAAAAGATGAAGGCTGCTACAGGAACAATGGATTATATCATAGATACGATTTCTGCTGTTCATCCGCTGGGTCCCCTGCTTGATTTGCTGAAGGTGAATGGAAAGCTGGCTTTTGTGGCGCTGCCTGGCGGTGCTCTTGAGCTGCCTATCTTTCCCTTGGTCATGGGAAGGAAGCTTATAGGGGGAAGCTACTTTGGAGGGCTGAAGGAGACTCAGGAGATGCTTGATTTCTGTGGAAAGCATGACATTACTGCAGATATTGAGTTGATTAAGATGAACGAGATCAACACTGCTATGGAAAGGCTCAGCAAAGGTGATGTTAAATATCGCTTTGTCATTAATATCTGGAACACCTTATCCTCCAGTAACATTTATTAG 1074 0.4507 MALSNSNVLGWAATDTSGHLSPFHFTLRENEADDVTIKILYCGVCHTDLHTIKNEWGVTNYPVVPGHEIVGVVTKVGSNVKKFMKGQRVGVGVMVDSCQECECCEQDLENHCLEHVLTYNSPYKGTQTRGGYSDLIVVHQRYVLYFPNDLPLAAGAPLLCAEITVYSPMKYYGMTEPGKHLGVAGLGGLGHLAIKFGKAFGLKVTVISSSPNKEAEAIHNLGADSFILSSDPEKMKAATGTMDYIIDTISAVHPLGPLLDLLKVNGKLAFVALPGGALELPIFPLVMGRKLIGGSYFGGLKETQEMLDFCGKHDITADIELIKMNEINTAMERLSKGDVKYRFVINIWNTLSSSNIY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271863g00055 357 Gene3D - 11 346 - -
Stsc271863g00055 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Stsc271863g00055 357 Gene3D - 161 317 - -
Stsc271863g00055 357 PANTHER ALDEHYDE REDUCTASE 7 350 IPR047109 GO:0016616
Stsc271863g00055 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 150 315 IPR036291 -
Stsc271863g00055 357 Pfam Alcohol dehydrogenase GroES-like domain 33 144 IPR013154 -
Stsc271863g00055 357 SMART PKS_ER_names_mod 18 345 IPR020843 GO:0016491
Stsc271863g00055 357 Pfam Zinc-binding dehydrogenase 188 309 IPR013149 -
Stsc271863g00055 357 CDD CAD1 10 345 IPR047109 GO:0016616
Stsc271863g00055 357 FunFam Cinnamyl alcohol dehydrogenase 161 317 - -
Stsc271863g00055 357 FunFam probable cinnamyl alcohol dehydrogenase 11 170 - -
Stsc271863g00055 357 SUPERFAMILY GroES-like 15 179 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271863g00055 Stsc-Chr271863 365880 368365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271863g00055 3 351 Monolignol Biosynthesis Gene Families AT2G21730 65.057 1.29e-164 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271863g00055 K00083 - gmx:100795575 516.538