LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271863g00022	ATGCTCCCTAAAACCCTAACTGCCACTCTCTTCCTTAACCTAACCCAACCTCCTTTACTATTTCGCTCTTCATCTCCCCGACCAACCTCCTTCGTTCGAGTAATGAGCTCCGAGTCGACCCAGCGAGTCTTCCAGCTCAAGCACGACCCTTTAACCGGCAACTCCGAATGGGTCATCATTGAAGACCAAAACGACGACGTTCCAAACTTCCCCAACCACCAGCACCTTCTCGCTACGACGTCGTATTTGGATATGCTCAACGATTCCCCAAGAAACACAGCATTTCGACAGGCCATTGAGAAAACCATCACCAAACCTTGCCGCGTTCTTGATATCGGTGCTGGAACTGGGTTGCTATCGATGATGGCTTCAAGAGCTATGGGTGGTGAAGGGTTTGTGACGGCGTGCGAGTCTTACCTTCCGATGGTGAAGTTGATGAAGAGAGTGTTGCGTGTCAACGGAATGGAAAGAAGAATCAGAGTCATCAATAAGCGTTCTGATGAACTCCATGTTGGTGTTGATGTGCCTTCACGTTTTGATGCACTTGTGAGTGAGATATTAGACTCAGAATTGCTGGGTGAGGGGCTTATACCGACCCTGCAACATGCGCATGACAGTTTATTGGTGGAAAACCCTTTGACCGTGCCATATCGAGCAACGACATACGGGCAGCTGGTTGAGAGCACATTCCTATTGAAGCTGCATGATTTACATAACAATGAAGCCAGTGCATCTGATGGAATTTGCCTTACCCCTACAGGACTTGAGAGTGTTTTAGGCATCAAACGTCAGCAATATGCTATGCATTGTGATCCAATAGGGAAAGAAATAAAGTTGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGACCAGAGAGTTGTGGAGAAACTGAGCTGTGCATAAAGGCAACTACTGGTGGTAGTGTTCATGCCGTTGTCTCATGGTGGGTACTTCAACTTGATCGTGAAGGAACAATCTATTACTCCACTGCTCCTAGGCGGACAAACTCAACAACCAGTACAAGTTCTGTTCATTGGTGTGACCACTGGAAACAGTGTGTTTGGTTCGTTCCTGGCAGTGGTGTTACGGTATCCAAAGGGGAAGAAGTTCATGTACATGCTACTCATAATGAAACTAGTATCTCATATAGCTTATATGCTAAGGGGCTAAAAACTGAGGTTTTGCACCATGGACTGAAAGCTGGAGACTTGCATCTTGTACTATCCCCAGAAAGGGCTGCAATCTATGGAGACAAAGAATGGAGGCTTTTAATGCGGAAAGCTGTAGAAAGTGCATTAAAGGGAAAAAGTCGTCCATTATGCTTGATTACGGATGATAGTGTATTTTTACCTCTCCTTGCGGCGCATCTTTCTGAAGAATCACATGTAATTTCATTATTTCCGGGGCTGATGGAAAGAGGTTCTCAGTATTTGCAAGCTGTTGCTCGGTCAAATCATATATCACCTGATCGCATAGAAGTTCTCGGAAAAAGGGTGAAACAGCTCACCATAAATGATACGCACAATAAAAAGGTTGATCTGTTAATTGCAGAACCTTTCTATCTTGGACTTGATTGCATGCTTCCATGGCAGAACCTGCGTTTTTGGAACGATCGGACCATGCTTGATTCCATCCTCGCTTCAGATGCTGTGGTTATCCCAAGCAGAGGAATGTTGAAAGCTTGTGCCATCTCTCTTCCTGATCTTTGGAAAAGTCGCCATTGCTTGAATAAGATAGAAGGTTTTGACCATACGGTGGTAAACTCTACAATGGGGGCTTGTGGTCAACTACCTGGATCGGAAGAGGGTCCTTGTCTGCCGTACTTCGTCTGGCAGTGTGGAGATTTTGATGTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTCTTAAAACAAATAAGCCAATGTCAAGGAAGATCTCAGGTTAAATTCACCAAGGCCGGGGTATGCCATGGATTTGTACTATGGATTGATTGGGTGATGGATCCACAAAATTCTTATGTGATATCAACTGGTCCAGATAAGAGGCATTGGAAGCAGGGGGTAAAGCTTCTTGGAACACCTAGAACAGTAGGACCATCCGATGGATCTGAAAACGTCGAAGCATGTCGTTCTGCAGTGCTAGAAGCATCTTTTGATCCATCCGATGGGGACCTCAAAATTATTCCTGATTTCTTATGA	2196	0.4472	MLPKTLTATLFLNLTQPPLLFRSSSPRPTSFVRVMSSESTQRVFQLKHDPLTGNSEWVIIEDQNDDVPNFPNHQHLLATTSYLDMLNDSPRNTAFRQAIEKTITKPCRVLDIGAGTGLLSMMASRAMGGEGFVTACESYLPMVKLMKRVLRVNGMERRIRVINKRSDELHVGVDVPSRFDALVSEILDSELLGEGLIPTLQHAHDSLLVENPLTVPYRATTYGQLVESTFLLKLHDLHNNEASASDGICLTPTGLESVLGIKRQQYAMHCDPIGKEIKLLSEPFKIFEFDFWKRPESCGETELCIKATTGGSVHAVVSWWVLQLDREGTIYYSTAPRRTNSTTSTSSVHWCDHWKQCVWFVPGSGVTVSKGEEVHVHATHNETSISYSLYAKGLKTEVLHHGLKAGDLHLVLSPERAAIYGDKEWRLLMRKAVESALKGKSRPLCLITDDSVFLPLLAAHLSEESHVISLFPGLMERGSQYLQAVARSNHISPDRIEVLGKRVKQLTINDTHNKKVDLLIAEPFYLGLDCMLPWQNLRFWNDRTMLDSILASDAVVIPSRGMLKACAISLPDLWKSRHCLNKIEGFDHTVVNSTMGACGQLPGSEEGPCLPYFVWQCGDFDVLSETFDVMEFDFLKQISQCQGRSQVKFTKAGVCHGFVLWIDWVMDPQNSYVISTGPDKRHWKQGVKLLGTPRTVGPSDGSENVEACRSAVLEASFDPSDGDLKIIPDFL	731

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271863g00022	731	PANTHER	PROTEIN ARGININE N-METHYLTRANSFERASE	480	705	IPR025799	GO:0016274\|GO:0018216
	Stsc271863g00022	731	Gene3D	-	218	400	-	-
	Stsc271863g00022	731	CDD	AdoMet_MTases	108	184	-	-
	Stsc271863g00022	731	Gene3D	-	562	729	-	-
	Stsc271863g00022	731	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	481	700	IPR029063	-
	Stsc271863g00022	731	Gene3D	Vaccinia Virus protein VP39	74	217	IPR029063	-
	Stsc271863g00022	731	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	82	385	IPR029063	-
	Stsc271863g00022	731	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	396	731	IPR025799	GO:0016274\|GO:0018216
	Stsc271863g00022	731	FunFam	Protein arginine N-methyltransferase 1.6	562	730	-	-
	Stsc271863g00022	731	FunFam	Protein arginine N-methyltransferase	75	217	-	-
	Stsc271863g00022	731	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	66	390	IPR025799	GO:0016274\|GO:0018216
	Stsc271863g00022	731	Gene3D	Vaccinia Virus protein VP39	407	558	IPR029063	-
	Stsc271863g00022	731	FunFam	Protein arginine N-methyltransferase 7	408	558	-	-
	Stsc271863g00022	731	PIRSF	Arg_N-mtase	41	728	IPR014644	GO:0006479\|GO:0008168
	Stsc271863g00022	731	FunFam	Protein arginine N-methyltransferase 1.6	218	401	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271863g00022	Stsc-Chr271863	200678	205753	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271863g00022	84	222	C2H2 Transcription Factor Family	AT3G12270	29.730	2.78e-09	58.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271863g00022	K11438		-	gmx:100785846	1101.66