Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271863g00021 ATGGAAAGTCACAAAATAACAATTCACAAATTGGATTACGAAGAGAGAATGGCTCAAGCTCGTGCGGTTGTTGTAGGCAATCTCCACCACGACAAGGTGGCTGATGTTAATGCTTCAAAGTTGGAATGGAATTTGGTCGTCGGCATCGTGCGGATGTATGAGTGTCCCCTCCCATCGAATCCGAGTGATTTCTACCAGGTTGATATGATCCTCCAGGATAGTGAGGGTGATCGCATTCAGTGCTCCATACCGAAGCAAACGTTTTGTTTCTTCAAGACCCTTCTTCAGGAGTTTGGCACATATAACATGAGAGATTTCATAGTGCAAAATCCAGGCAGAGGCGTCAGGACCACCTCCCACAGGTTCAAACTGTCTTTCTATCAGAAGACTTCTGTACAGAGGCTCTCCACTCAGACATTCCCATTTAGCCCAATTCGTATAACACCATTTACTGGCGTTGTGGCCATGACAGAGGCTCGACAATTCCATCTTATAGATTGCATAGGTCACGTTGTTGGGAAGGAGGATGTGTTTGATATGGTCACAAGAAATGGGGATGCTAGCAAGCGGATGGCAGTATACTTACAAGATATAGAGGGAAGAAAAATGAAGTGTACGTTGTTTGGGTCAGAAATGATAAGTCAGTTCCATTCTTTTCTCCAGCGTGATAACGTTGAGCCTGTTGTGATGGTTGCACAGCTGTTTAAGCCAAACTTTTACCTTGACGAAACCAGCATCCAAAGTACCTTCAATTCGTCGCAGATATTGTTCAATCCGGAATACCCTGAAGTTATGCAGTTTAGGGAGAGGTTATTGGCTCTTGGTGATCTTGCAAGTCAGGGGATTGCTGATGTTCCCACTCAGTCTCAAAATTCAGTTAGCATGGAGCTTTCTGGTGGCTCTATCAACGTTGAGACCATTGAGTCAGTCCTAAATATGAATGAGGAAAAACACTGTTGGGTCATGGGGAAGATGGTGTCTTTTGATTGCGAAGTAAAGGGATGGTACTATGCATCATGTAGGAACTGTTACAAGAAGGTGGATGACAGCAAAAATGTATACAAGTGCACGACCTGTGGACAAATTGGGAGTAAACCTATGTTGAAGTATCGCCTAAATGTGATTATCACGGATGGGACTGGTTGTATCACAGTTCTGCTATGGAATAGTGAGACAACAACAGTATTGGGCAAAACTGCTAGGGATGTGAAGGATTCTGAACCTGATTTACATCCAACAAGTTATGCAAAAGTCTTTGATTGCCTCATGGAAAGAAAGATCTTGCTGAAGATATCTATTGAGAGGAAGAACATTAGCAACGTGGATCCAGTCTATACGGTTCTGAAAGTCAGCGATGATCCAGCGTTTATTGAGATGTATAGTTCACAGCGATCTAATATATATGAACCTGAAGTTAGTACCTCAACTGGAGCGGCTTCCTTCGGAGGGGTTGATGCTGATTTTTATTTGGGTGGTTCTGCGGTTGTGTCTCTTTCCAAGGTCATGCATACACTAGATGTGTTGTTTATTTATAAGAATAAAATAGTTATAAGGGTTAACAATTATTCATAA 1572 0.4256 MESHKITIHKLDYEERMAQARAVVVGNLHHDKVADVNASKLEWNLVVGIVRMYECPLPSNPSDFYQVDMILQDSEGDRIQCSIPKQTFCFFKTLLQEFGTYNMRDFIVQNPGRGVRTTSHRFKLSFYQKTSVQRLSTQTFPFSPIRITPFTGVVAMTEARQFHLIDCIGHVVGKEDVFDMVTRNGDASKRMAVYLQDIEGRKMKCTLFGSEMISQFHSFLQRDNVEPVVMVAQLFKPNFYLDETSIQSTFNSSQILFNPEYPEVMQFRERLLALGDLASQGIADVPTQSQNSVSMELSGGSINVETIESVLNMNEEKHCWVMGKMVSFDCEVKGWYYASCRNCYKKVDDSKNVYKCTTCGQIGSKPMLKYRLNVIITDGTGCITVLLWNSETTTVLGKTARDVKDSEPDLHPTSYAKVFDCLMERKILLKISIERKNISNVDPVYTVLKVSDDPAFIEMYSSQRSNIYEPEVSTSTGAASFGGVDADFYLGGSAVVSLSKVMHTLDVLFIYKNKIVIRVNNYS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271863g00021 523 CDD RPA1_DBD_C 307 453 IPR047192 -
Stsc271863g00021 523 SUPERFAMILY Nucleic acid-binding proteins 30 135 IPR012340 -
Stsc271863g00021 523 SUPERFAMILY Nucleic acid-binding proteins 163 271 IPR012340 -
Stsc271863g00021 523 CDD RPA1_DBD_B_like 166 271 - -
Stsc271863g00021 523 Gene3D - 140 276 IPR012340 -
Stsc271863g00021 523 CDD RPA1_DBD_A_like 45 132 - -
Stsc271863g00021 523 Pfam Replication factor-A C terminal domain 334 442 IPR013955 -
Stsc271863g00021 523 Pfam Domain of unknown function DUF223 69 155 IPR003871 -
Stsc271863g00021 523 Gene3D - 30 134 IPR012340 -
Stsc271863g00021 523 Gene3D - 288 458 IPR012340 -
Stsc271863g00021 523 SUPERFAMILY Nucleic acid-binding proteins 303 452 IPR012340 -
Stsc271863g00021 523 PANTHER OS03G0429900 PROTEIN 33 448 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271863g00021 Stsc-Chr271863 195349 198869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271863g00021 71 405 Core DNA Replication Machinery Family AT5G08020 21.765 1.35e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271863g00021 - - ahf:112695129 453.366