Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271863g00010 ATGGGCCTTTTGGTTTTCATTAGTTGTTGCATATTATTGCATGCAGCAACAACAACCGTGACGTCCGCCACAACCTACCGGGACACCACCCCTAAAGTATTTCTCTCTTCCAAGAACAGTTCTGGACACAACTTCCGGTGGCTTGGACCCATTGGTCACCGTGTCATCACTGTCGATGCCAACGGCGGTGGCCATTTCCGGTCGGTCCAAGATGCCATTGATTCCATCCCGGACAATAATAGAATGAACATTCTCATTCAAATTAGCGCCGGAGTCTACATAGAGAAAGTAGTGGTGCCGGTGACGAAACCGTACATTACGCTTCAGGGGGCGGGGAGGGACACGACGGCGATAGAATGGCACGACAGAGCAAGTGACCGCGGCCCCAACGGACAACAACTTCGTACTTACAGAACTGCTTCTGTGACTGTCTTCGCCAATTATTTCTCTGCTAGGAATATCACCTTCAAGAACACAGCCCCAGCACCAATGCCAGGGATGCAAGGACGGCAAGCAGCGGCGTTTCGCATATCCGGGGACAAAGCATACTTCTCCGGCTGCGGCTTCTACGGTGCTCAAGACACTCTTTGCGACGACGCTGGCCGCCATTATTTCAAGGAATGCTACATCCAGGGCTCCATAGATTTCATTTTTGGTAACGGCAGGTCCATGTACAAGGACTGCGAGCTTCACTCAATAGCAACAAGGTTTGGGTCAATAGCGGCCCAAGATAGGAGAAGCCCATACGAGAAGACAGGCTTCGCATTTGTACGTTGTAGGGTAACAGGCTCAGGCCCAATATATGTGGGCCGTGCAATGGGCCAATACTCTAGGATCGTGTATGCCTATACCTACTTCGCAGACATAGTTGCTCATGGTGGTTGGGATTATTGGAACGGTGCAGACAACAAGAACAAGACTGCATTTTTTGGGGTGTACAAGTGCTGGGGCCCAGGAGCAGCCAAAATTAGTGGGGCCTCATTGGCCCAAGAACTTGATTACGAAGCAGCCCATCCATTCCTGGCCAAGAGTTTTGTTAATGGTAGACACTGGATTGCGCCCTCTGATGCTTAG 1074 0.5084 MGLLVFISCCILLHAATTTVTSATTYRDTTPKVFLSSKNSSGHNFRWLGPIGHRVITVDANGGGHFRSVQDAIDSIPDNNRMNILIQISAGVYIEKVVVPVTKPYITLQGAGRDTTAIEWHDRASDRGPNGQQLRTYRTASVTVFANYFSARNITFKNTAPAPMPGMQGRQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIQGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRRSPYEKTGFAFVRCRVTGSGPIYVGRAMGQYSRIVYAYTYFADIVAHGGWDYWNGADNKNKTAFFGVYKCWGPGAAKISGASLAQELDYEAAHPFLAKSFVNGRHWIAPSDA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271863g00010 357 SUPERFAMILY Pectin lyase-like 53 354 IPR011050 -
Stsc271863g00010 357 ProSitePatterns Pectinesterase signature 2. 210 219 IPR033131 -
Stsc271863g00010 357 Gene3D - 52 356 IPR012334 -
Stsc271863g00010 357 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 52 353 - -
Stsc271863g00010 357 Pfam Pectinesterase 56 348 IPR000070 GO:0030599|GO:0042545
Stsc271863g00010 357 FunFam Pectinesterase 51 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271863g00010 Stsc-Chr271863 110612 114276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271863g00010 43 357 Carbohydrate Esterase AT5G47500 78.413 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271863g00010 - - cam:101501763 597.816