Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271862g00061 ATGGAGCACGCCGCACTAGATTCCATCCAATTCAGCGAGCAAATCCAGGGGCTCATGGCTCCGGCGCCGGAATCCACCAGCTCCTTCACGGCGCTCCTCGAGCTTCCGCCTCCGCAAGCCGTCAAGCTACTCCACTCACCGGATAAGGCTCCTGCCGGTTCCGGAAAACCGCCATGCCACAACAGCATCCCGAAACCCTACCCCTCCCTGATGAGCATCATCGACGGAACCCGCAAGCTCACGTTCCCTTCCAACGCCGAGCTCATCGAGCGCGCCGCGAGGTTCTCCGTTTTCGCCGGAGAAGGACCGCCGGTGGCGGAGGTGAAAAACGAGCCGCCGGAGACCGATTCGAACCCGAGCTCAACTCAGTGCGATCCCGCGGTTGAGAATAAGGGCGCGAAGAGGAAGGAGCGAGAGAAGAAGGTGAAGGCGACATCGAAGAAGAGCAAGAGCGTCGCTGCCGCCGAGAGTTCCGGTGACGGCGAGAGGCTTCCGTACGTTCACGTTCGCGTTCGTCGAGGTCAAGCCACCGATAGCCATAGCTTAGCAGAAAGGGCAAGGAGAGAGAAGATAAATGCTCGGATGAAACTTTTGCAAGAGCTGGTCCCCGGTTGCAATAAGATATCAGGCACAGCATTGGTTCTGGATGAAATCATCAACCATGTCCAATCTCTACAGCGACAAGTGGAGTTTTTATCAATGAAACTAGCAGCAGTTAACCCAAGAATTCACTTCAACCTTGACAGCTTAATGCCTAATGAAGGGGCATCTCTAATGGACAGTGGCATTCCTAACATGGTTTCACCCCTCATGTGGCCGGAAATCCCAAACAATGGAAATAGAGGACAATATCAGCAACCATGGCAATTCGATGCATTCCACCAACCAGTTTGGGGAAGGGAAGAAGAAAACCCTAATTTTATGACTCCAGAAAACTCAATGTTGAGTTATGATTCATCAGCTAATTCAGTATCTCTACACTCAAATCAGTTGAAGATGGAGCTCTGA 1008 0.5268 MEHAALDSIQFSEQIQGLMAPAPESTSSFTALLELPPPQAVKLLHSPDKAPAGSGKPPCHNSIPKPYPSLMSIIDGTRKLTFPSNAELIERAARFSVFAGEGPPVAEVKNEPPETDSNPSSTQCDPAVENKGAKRKEREKKVKATSKKSKSVAAAESSGDGERLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIHFNLDSLMPNEGASLMDSGIPNMVSPLMWPEIPNNGNRGQYQQPWQFDAFHQPVWGREEENPNFMTPENSMLSYDSSANSVSLHSNQLKMEL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271862g00061 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 225 IPR011598 GO:0046983
Stsc271862g00061 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 245 IPR036638 GO:0046983
Stsc271862g00061 335 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 88 319 IPR024097 GO:0006355
Stsc271862g00061 335 MobiDBLite consensus disorder prediction 103 159 - -
Stsc271862g00061 335 FunFam transcription factor bHLH48-like isoform X1 172 244 - -
Stsc271862g00061 335 MobiDBLite consensus disorder prediction 113 127 - -
Stsc271862g00061 335 Pfam Helix-loop-helix DNA-binding domain 179 226 IPR011598 GO:0046983
Stsc271862g00061 335 MobiDBLite consensus disorder prediction 42 63 - -
Stsc271862g00061 335 Gene3D - 172 246 IPR036638 GO:0046983
Stsc271862g00061 335 Coils Coil 215 235 - -
Stsc271862g00061 335 CDD bHLH_AtBPE_like 165 250 - -
Stsc271862g00061 335 SMART finulus 181 231 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271862g00061 Stsc-Chr271862 454696 460297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271862g00061 5 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 49.468 1.27e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271862g00061 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271862g00061 - - vun:114168708 434.491