Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271862g00052 ATGTCTTGCTCAACCAAAAAATATGATGTTTTTCTTAGCTTCAGAGGTGAGGACACCCGCACAAACTTCACAAGCCATCTTTACTCTGCTCTTGATCAAAAATCAATAAGAACTTACATAGATTATCAACTTAACCGAGGCGAAGATGTTTGGCCACCACTTGCTAAAGCAATCGAGGACTCGCATGTGTCGGTTGTGGTTTTCTCTGAGAACTATGCTTCTTCAAAATGGTGCTTGGAGGAACTTATCAAGATTCTCCAATGCAGAAAGGATTTTGGTCAGGTTGTTATTCCGGTGTTCTATGAAACAGATCCATCACATATAAGAAAACAAAGTGGGAGTTATGGGAAGGCATTTGCAAAACATGAGCGTGATCTGTGGGTAGCGGGCAGAGACAGTGATTCCAACAAACAGAGAGTAGAGAATTGGAGAGCTGCCCTCACTGAAGCTGCCAATATTTCTGGGTGGGACTCTCGGAACCACAAGGACGATTCTCAACTTATTGCAAACGTTGTTAATGATGTACTGCAAAAGCGTTACTTGAGGCACCCTATTGAACTAAAAGGCCTAGTTGGAACAGAAGAAATATGCAAAAATGTTGAGTTGTTAATGAAAAGAGTTCGAGTAATCGGAATTTGGGGCATGGGCGGAATAGGTAAGACAACCATTGCAAAAGTGTTGTTTGCCAAACTGTTTCCTCAGTATGACAATGTTTGCTTTGTGGTGAAAGAAATCTCAGTTGATAGACTTCTGTTCGAGCTGTTAAAGGAAGAATCTTCCACATCTAATGTAGTAGGACTCGCATTCGACATGAAAAGGCTTAGTAACAAGAAGGTCCTCATTGTGCTAGATGATGTGGATAGTCTTGATCAATTGGAACATTTGTGTAGAGATTTTCGAGATCTAAGTGAAGATAGTAGACTCATCATAACTACAAGAAATAGGCAATTGCTTGCTGGAAGAGTTGATTGGATATACAAGGTCGAGAAATGGAAAGCCTCTGAATCTCTACAGCTTTTTAGCTTGGAAGCCTTCAAGGAAAGTCATCCCCAAAGTGGTTATGAACATCTCTCCGCAATGGCCGTTAAGTATGCCGGAGGCATTCCCTTAGCTTTGAAAGTTTTGGGTTCGTATCTTCGTTCGAAAAGTATTAAGTTTTGGGAAAGTACTTTGAGAAAGCTCAAAAAGTATCCCAATGAGACGATTCTAAATTTGTTAAAAGTAAGCTATGATGGATTGGATGATTTAGAGAAGAAGATATTCTTGGACATTGCATTTTTTTTCAATGGAGAAGAGAAAGATCATGTCATAAGCATACTAGATGCATGTGGGTTTGAAGCAAGTAGTGGAATAGATGTCCTTGAAGATAAAGCTTTGATAACTATTTCATATAACAACACAATAGAAATGCATGAATTGCTACAGAAAATGGGTTTTGACATAGTGCGTAGAGAATGTAGCGGAGACCTTGCAAAACGTAGTCGATTGAGAGATACTGAAGTTCGTGCTGTACTTAAAGATAATAAGGGGACTGATGCAGTTGAAGGGATAACATTAGATTTATCTCTAATCAAAGAGATTCATTTGAATGTTGACACATTCCAAAGGATGAATAACATGAGATTTCTAAGATTCTATATCCCCTTGGGTCAGAGTCCTGGCCATATGTGCCTTCCAAGAGCTCTTAAGTCATTTTCCAATAAACTGAGGTACTTTGAGTGGAATGGATATCCTTTGGAGTCTCTTCCGCCAACTTTTCATGCTAAGTTGCTTGTTGAAATTCGCATGCCACACAGTCGTGTCGAACAACTTTGGAGAGGAAAACAAGAACTTGATAATTTGGAGAGCATTGACCTAAGCGAATGCAAACATTTGATCATGCTTCCAGATTTGTCAAAGGCATCAAGACTTAAATGGGTGAATCTATCCGGTTGTGAGAGTTTATGTGCTCTTCATTCATCTATTTTGTCCTCTGATACACTTGTGACCTTGATACTAGATAGATGCACAAATCTTGGGAGTGTGAAAGGTGAAAAACATTTAAAATCTCTGAAGAATATTAGTGTCAATGGATGCTCAAGTCTCAAGGAATTTGCAGTGTCATCTTATTTAATTGAGAACTTGGATTTAAGCAAGACAGGAATTGAGACACTAGACACATCAATTGGGAATCTACCTAATCTTATATGGCTCAATTTAGAAGGCTTAAAGCTTAAGCATCTTCAACCGGAGATATCTTGCTTGACATCACTCAAGGAGTTAAAGATATCTTACAGTGGACTAGTAACTGACAAGCAGCAACTGCATGTCCTGTTTGATGGCTTGAGATCCTTGCAGATACTCCATCTAAAGGATTGTGCTAATTTGTTCGAACTTCCCGACAACATTGGCGCGTTATCGAAATTGCAAGAGTTAAGGCTAGATGGAAGCAGTGTGAGGAGCTTGCCCACAACCATCAAACATCTTTTAGCACTTGAGATTCTGTCGTTGAAGAATTGCAGGGAGCTTCTGACCCTACCGGAGCTTCCGTCTTTCGTCAAGGAGTTTTATGCCCATAACTGCATCTCATTGGTGACAGTACCGAATTTGAAAAGCTTCGCGACAAAGATGGTGGGAAAGACAAAACACATTTCATTCAAGAATAGCTTGAAATTGAATGGAAACTCCCTGTATTCTATCATGGAAAGCATGCATTTAACAATGTTGAGTGCTGCATTTCACAATCTGTTGGTTAGAAGATCCCATGTGGCCAGCAATGGTTACAATTATAACTGTGTGGATGCTTGTTTACCAGGAAGCAGAGTCCCGGAGCAAGTCACATATCGAGTAACAAAATCTTCCTCCATTACAGTTCATCTTCCTACTTGTTCCGACTTGCTGGGCTTTATTTACTGTGTAGTTCTTTCACCATCCAATGGAATTAAGCAGCGCGGTGCAAAAATACAATGTGAATGCAATGCGGCAGGAGGCCTAAAAGCTACATGGCAAGATAAAGCCGATAGCGAGCTGAACTCAGATCATGTTTATTTATGGTATGATCCATTCCATTGTGACAACATTCTCAGATTTTATGAACCAAAGGTCTGTTTCGAGTTCAGTGTTACAACTGACACAGGGGAAGTTGATGGATCTATTGCTATTCAAGAGTGTGGTGTGCATCTCATAACTGATTCAGAATTGCAGCATGTTTTACCAGAATTGGAAATGGATTTAGACAAGAGGACTGACTTTGAGAAGGGATTGGATATAGAATCTGGAAAAGCCAGATGGTTATATCCATATGCCTCCAAAGATCACAACCAAAATCTGGTCACCCCTCCCCCTCCTCCTACTCCCTCAACCCCTCCACTCCCACAACCAAAAACTAGAAAGAAAGTAAGGTCTCAGAAGGAGAAAGGTAGCAGCAAGAGAAAGCGGAAGCAGAATCAAGGAACTGCGTTATGTTGCTGTGATCGGAAAGTAGCCACAAAAAATTTGAAGTCTGGGATTGTTGAAGTAGATCCAAGGAGTACAGAGCATTTTCCTGATGTGGAAAAGAGTATGGAATCTAATTGCAAGAAAATCAAGAATGTTGCTAGAACAGGTCTTGGGGAAAATAACTCAAAGTCAACAAATGCTGTCAAAAGCAAAGGAAGTGAAAATGTGCTTGAAAATGTGTCGGAAGACATGCCAGTTCAGAACTTTTATGATCAACCAAATACCATAGAAGGGTGTAAGCACCTTGAAGAAAATCCTATGCTACTAAGAAGACAACTTCTGATTCATCCTGACATTTGTGATCTGACAATTGAAGAACCAAATCAAGAAAGAGAAAAGGACGAAATAGGTTTCGACAAACCTAAACCTGAAGATGAGTCAGATGAAGATCCTCTTGATGAACTTGAGAGCATCTTGTTGGGAAGCCAGAAGTCCTCGCCAAAACCGGCCTGTTCTTCAGGCGATGTTGCCATAAGGGAAGCTTTGCATAATATTGAATGCATACTCGAAAAGTCACTTGAAAGCATTCATGATGACACTGACTTGCAACACAAGTTACAAATTTCTTTGCAATGCATAGAACAGGCAACAGATGAAAAAGTTTCTCCCAGTATAACAAAGCTTATCAAAAGCATGACATCTTCTGTTGAGGATCTGATCAAAAGTTTCGCGTCGACCCGAAAAGCAGTCGAAGACCACACTAGCCGCTTGGAACAAAAAGAAAAACTTGTGCAGCAAATGTTAGATGCTAGGAAACAGCAAGAATTACTGAAAGAAAGGATGGAACAATACAATTTTGAAGCAGAAATTCTTGACAGAGAGGTTGAAGATCTCGACGAACAAATCCGAGTGCTTGTTGAGCAAAGAAAAATCATCCAAATGAAACGGACCAAGTTGAATATGGACTTGGAAGAATGCAATGGCAAAAGGAGGAAACTAACAGATGAAGCTAAGAATTGGGTAGCTGAAAGCAAGGAGCTAATGTTGACAATTGACAATTCTCAAGTCTCGTATGCACATGCAATAACCAAGCAGGAGAAGTTGAATAACAAATGGGAAGGTTTTCGAGCATCTTTTTCACAAAACTTAAGAAGCTAA 4575 0.3996 MSCSTKKYDVFLSFRGEDTRTNFTSHLYSALDQKSIRTYIDYQLNRGEDVWPPLAKAIEDSHVSVVVFSENYASSKWCLEELIKILQCRKDFGQVVIPVFYETDPSHIRKQSGSYGKAFAKHERDLWVAGRDSDSNKQRVENWRAALTEAANISGWDSRNHKDDSQLIANVVNDVLQKRYLRHPIELKGLVGTEEICKNVELLMKRVRVIGIWGMGGIGKTTIAKVLFAKLFPQYDNVCFVVKEISVDRLLFELLKEESSTSNVVGLAFDMKRLSNKKVLIVLDDVDSLDQLEHLCRDFRDLSEDSRLIITTRNRQLLAGRVDWIYKVEKWKASESLQLFSLEAFKESHPQSGYEHLSAMAVKYAGGIPLALKVLGSYLRSKSIKFWESTLRKLKKYPNETILNLLKVSYDGLDDLEKKIFLDIAFFFNGEEKDHVISILDACGFEASSGIDVLEDKALITISYNNTIEMHELLQKMGFDIVRRECSGDLAKRSRLRDTEVRAVLKDNKGTDAVEGITLDLSLIKEIHLNVDTFQRMNNMRFLRFYIPLGQSPGHMCLPRALKSFSNKLRYFEWNGYPLESLPPTFHAKLLVEIRMPHSRVEQLWRGKQELDNLESIDLSECKHLIMLPDLSKASRLKWVNLSGCESLCALHSSILSSDTLVTLILDRCTNLGSVKGEKHLKSLKNISVNGCSSLKEFAVSSYLIENLDLSKTGIETLDTSIGNLPNLIWLNLEGLKLKHLQPEISCLTSLKELKISYSGLVTDKQQLHVLFDGLRSLQILHLKDCANLFELPDNIGALSKLQELRLDGSSVRSLPTTIKHLLALEILSLKNCRELLTLPELPSFVKEFYAHNCISLVTVPNLKSFATKMVGKTKHISFKNSLKLNGNSLYSIMESMHLTMLSAAFHNLLVRRSHVASNGYNYNCVDACLPGSRVPEQVTYRVTKSSSITVHLPTCSDLLGFIYCVVLSPSNGIKQRGAKIQCECNAAGGLKATWQDKADSELNSDHVYLWYDPFHCDNILRFYEPKVCFEFSVTTDTGEVDGSIAIQECGVHLITDSELQHVLPELEMDLDKRTDFEKGLDIESGKARWLYPYASKDHNQNLVTPPPPPTPSTPPLPQPKTRKKVRSQKEKGSSKRKRKQNQGTALCCCDRKVATKNLKSGIVEVDPRSTEHFPDVEKSMESNCKKIKNVARTGLGENNSKSTNAVKSKGSENVLENVSEDMPVQNFYDQPNTIEGCKHLEENPMLLRRQLLIHPDICDLTIEEPNQEREKDEIGFDKPKPEDESDEDPLDELESILLGSQKSSPKPACSSGDVAIREALHNIECILEKSLESIHDDTDLQHKLQISLQCIEQATDEKVSPSITKLIKSMTSSVEDLIKSFASTRKAVEDHTSRLEQKEKLVQQMLDARKQQELLKERMEQYNFEAEILDREVEDLDEQIRVLVEQRKIIQMKRTKLNMDLEECNGKRRKLTDEAKNWVAESKELMLTIDNSQVSYAHAITKQEKLNNKWEGFRASFSQNLRS 1524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271862g00052 1524 Gene3D - 182 322 IPR027417 -
Stsc271862g00052 1524 PRINTS Disease resistance protein signature 273 287 - -
Stsc271862g00052 1524 PRINTS Disease resistance protein signature 365 379 - -
Stsc271862g00052 1524 PRINTS Disease resistance protein signature 609 625 - -
Stsc271862g00052 1524 PRINTS Disease resistance protein signature 209 224 - -
Stsc271862g00052 1524 SMART till_3 7 153 IPR000157 GO:0007165
Stsc271862g00052 1524 Pfam NB-ARC domain 204 400 IPR002182 GO:0043531
Stsc271862g00052 1524 MobiDBLite consensus disorder prediction 1123 1139 - -
Stsc271862g00052 1524 SUPERFAMILY L domain-like 519 892 - -
Stsc271862g00052 1524 Gene3D - 332 414 IPR042197 -
Stsc271862g00052 1524 MobiDBLite consensus disorder prediction 1103 1119 - -
Stsc271862g00052 1524 Gene3D - 4 181 IPR035897 -
Stsc271862g00052 1524 Pfam TIR domain 7 179 IPR000157 GO:0007165
Stsc271862g00052 1524 Coils Coil 1455 1482 - -
Stsc271862g00052 1524 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Stsc271862g00052 1524 MobiDBLite consensus disorder prediction 1264 1291 - -
Stsc271862g00052 1524 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 180 - -
Stsc271862g00052 1524 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 699 IPR044974 GO:0006952
Stsc271862g00052 1524 MobiDBLite consensus disorder prediction 1264 1284 - -
Stsc271862g00052 1524 Pfam C-JID domain 930 1060 IPR045344 -
Stsc271862g00052 1524 Gene3D Ribonuclease Inhibitor 514 704 IPR032675 -
Stsc271862g00052 1524 Gene3D Ribonuclease Inhibitor 705 877 IPR032675 -
Stsc271862g00052 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 424 IPR027417 -
Stsc271862g00052 1524 Coils Coil 1389 1447 - -
Stsc271862g00052 1524 MobiDBLite consensus disorder prediction 1098 1144 - -
Stsc271862g00052 1524 ProSiteProfiles TIR domain profile. 6 179 IPR000157 GO:0007165
Stsc271862g00052 1524 SUPERFAMILY "Winged helix" DNA-binding domain 401 486 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271862g00052 Stsc-Chr271862 417987 424591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271862g00052 4 834 WRKY Transcription Factor Family AT4G12020 30.805 2.99e-92 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271862g00052 - - cam:101515491 1634.77