Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271862g00042 ATGGCGCCGAAGAATAATAAGAAGAAGAGACCAAGGGTTTCCGACGACGAAGAACAAATCGAATCTGAACAGCCTCACTCCCCTCTCAGTAACAATGAAAACACCCTCTATCAGGTACTTGGTGTAGAGAGAACAGCATCTCAACAGGAAATAAAGAAGGCATATTACAAGTTAGCATTGAGGCTGCATCCTGACAAGAACCCTGGTGATGAGGAGGCTAAAGCAAAATTTCAGCAATTGCAAAATGTTATCTCGATTCTTGGGGATGAAAAAAAGCGAGCCATTTATGATGAGACTGGTTGTTTTGATGATGCTGACCTTGCTGGGGATGTTGTCCAGAATCTTCACAACTATTTCAGAACAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGTTCTGACTCTGAGACAAATGATTTGATCGATTTGTACAAGAAGTGCAAGGGTCATATGAACAGGCTATTCTGTTCAATGCTTTGTTCTGATCCCAAATTTGACTCTCACCGATTCAAGGATATTCTTGATGAGGCCATAGCAGCTGGAGAACTTAAAGAAACAAAAGCTTATAAAAAATGGGCAAAAAGAATATCAGAAATCAAGCCACCAACTAGTCCTTTAAGGAGGAAGGCCAAACCAAGTAAGAAGCCAGAAACAGATCTTTATGCAATCATCTCACAACGTCGAACTGAGAGAAAAGACAAGTTTGAATCTATGTTTTCATCTCTAGTTTCAAAATATGGTGGAAGTGATGTGCCGGAACCCTCTGAAGAGGAATTTCAAGCTGCGCAAAGGAAGATGGAAAACCGACGTTCTGCGAAGAAATCAAAGCGGAAATAA 861 0.4077 MAPKNNKKKRPRVSDDEEQIESEQPHSPLSNNENTLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKAKFQQLQNVISILGDEKKRAIYDETGCFDDADLAGDVVQNLHNYFRTMYKKVTEADIEEFEANYRGSDSETNDLIDLYKKCKGHMNRLFCSMLCSDPKFDSHRFKDILDEAIAAGELKETKAYKKWAKRISEIKPPTSPLRRKAKPSKKPETDLYAIISQRRTERKDKFESMFSSLVSKYGGSDVPEPSEEEFQAAQRKMENRRSAKKSKRK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271862g00042 286 MobiDBLite consensus disorder prediction 253 286 - -
Stsc271862g00042 286 ProSiteProfiles dnaJ domain profile. 35 100 IPR001623 -
Stsc271862g00042 286 MobiDBLite consensus disorder prediction 208 231 - -
Stsc271862g00042 286 Gene3D DnaJ domain 20 114 IPR036869 -
Stsc271862g00042 286 PRINTS DnaJ domain signature 37 55 IPR001623 -
Stsc271862g00042 286 PRINTS DnaJ domain signature 55 70 IPR001623 -
Stsc271862g00042 286 PRINTS DnaJ domain signature 72 92 IPR001623 -
Stsc271862g00042 286 PRINTS DnaJ domain signature 92 111 IPR001623 -
Stsc271862g00042 286 Pfam DnaJ domain 36 97 IPR001623 -
Stsc271862g00042 286 MobiDBLite consensus disorder prediction 8 23 - -
Stsc271862g00042 286 SUPERFAMILY Chaperone J-domain 33 118 IPR036869 -
Stsc271862g00042 286 MobiDBLite consensus disorder prediction 208 224 - -
Stsc271862g00042 286 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 28 286 IPR042977 -
Stsc271862g00042 286 CDD DnaJ 35 89 IPR001623 -
Stsc271862g00042 286 SMART dnaj_3 34 92 IPR001623 -
Stsc271862g00042 286 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271862g00042 Stsc-Chr271862 371074 374177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271862g00042 37 97 C2H2 Transcription Factor Family AT1G74250 42.424 3.15e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271862g00042 K09529 - gmx:100781463 467.618