Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271862g00040 ATGGAGAGTGACAAGATGGAAGACTATGAAGTGATACAGCAGCTTGGAAGAGGAACATTAGGTCCCACTTTTCTTGTTTTCCACAAAACTCAGAATCAAAGGTGTGTGCTGAAGAAGATTCGGTTGTCCAAGCAAACAGATAAGTCACAGCTATCATCAGCACCCCAAGAGATGAACCTGATTGCAAAACTAAGTAGCCCTTATATTGTGGAGTGCATAGATGCTTGGGTAGAAAAGGGGGACTATGTATACATCATATCTGCTTATTGTGAAGGAGGTGACATGGCTCAGTATATAAAGAAAGCTCGAGGATCATTCTTCCCTGAGGAGAGAGTTTGCAAATGGATGACTCAGTTGTTGCTAGCTGTGGACTACCTGCACTCTAACCGGGTACTCCACAGAGATCTTAAGTGTTCCAACATACTTCTCACGAGAGACAATAACATTCGGCTAGGTGACTTTGGTCTTGCAAAGCTACTCTATACAGAAGACCTTCCTTCCCCGGTTATTGGAACTCCAAACTACATGTGTCCTGAACTCTTCGATAACATGTCTTACGGTTATAAATCCGATATATGGGCTCTCGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCAGCATTTCGTGCACTGGACAGGGCAGGACTAATCAACAAAATAAATAGATCCTCCATTTCTCCACTGCCAATTGTTTACTCTCCCACGCTGAAGCAACTTATCAAGAGCATGCTGAGGAGAAACCCAGAACATAGACCTACAGCAGCCGAGTTATTAAGGCATCCTCATTTACAACCTTACGTTCTTCGCAGTCGCATTGCTTCGCCCGTTTTTCTTCCTGTGCATCTCATAAATAGTAGCCCAAAAGATAAAACAAAGCAATCTCCCAAAAAATCTAGTGGTGGCAGAGATCATAGAGACAAACAAGAAGGATTAGTAAATCGTTTGGAGGGAGTTCATCTTGTTGAGGGAAATGCAGAGGTACATGTGAATAATCATGATAATGATGGCAAGCTAACAGTCTCAACGTGTGCCGAAGACATCCTTGAGACTAAGATGGTTGATCCTACCAGCTACACAATGGAAAATTCAGCCAGTATTAGTGGATCAAAAGATGGGTCGATTACATCTGATTCAGCCATTTGCAGTGTGTGCAAGGAAGCAGACTTTAAAGGTAGACTTGCGAAGGAAGCAACAGAAAATGAGATCACATCAAAGAGTACACCAGATTCTGTGCATGAGAAACAAGGATTTGCTACTGAAAATTTTCTCCAGTCAGATTCAACTAATGTAACTACAGCCACAAAAATCGAACACACTCTTCCCAATGGAGGTTTGGATAAAACTGATCCGTTGAGGGACGTCGCCAAACCGGTGGACTCCTGTAAATCTGTAATGTCCAGTCAAGACAGTTCTGTCGGGAATGATAAAGATGACTTTGTTGATGAAGAAAGATCATCCCCAGTTTCGCAGCCCATTGATCTTGAGAAAGACACCGAATCCAATAGAAGCTTAAAGAAAATTGAAAACCATGATGCATCTACCGGAGTCTCACATTTGGACTGCTTGTCATCTGCAAGTAACGATACACTTCCCGGCAAGGTCGAAGGCGTTGCAACCACAGCTGCACATAAAGAAGGTGATGACACTAAAACACTGAATGGCATTACATTAAGCATGCCTACTTCAAATGGCGGCGGCGGAACAACAAAGTCTGTGTTGCTTAATAGATCCCAGAACAGAGCTGATGCTCTGGAAGCTTTGCTTGAGTTATGTGCTCAGCTGCTTAAACAAGGGAAACTTGATGAACTGGCTGCTGTGTTAAGACCATTTGGAGAAGACACTGTCTCATCAAGAGAAACAGCAATATGGCTCACTAAGAGTCTTCTCTCATCACAGAAATTTAATCCAGAAACCTAA 1920 0.4276 MESDKMEDYEVIQQLGRGTLGPTFLVFHKTQNQRCVLKKIRLSKQTDKSQLSSAPQEMNLIAKLSSPYIVECIDAWVEKGDYVYIISAYCEGGDMAQYIKKARGSFFPEERVCKWMTQLLLAVDYLHSNRVLHRDLKCSNILLTRDNNIRLGDFGLAKLLYTEDLPSPVIGTPNYMCPELFDNMSYGYKSDIWALGCCMFEIVAHQPAFRALDRAGLINKINRSSISPLPIVYSPTLKQLIKSMLRRNPEHRPTAAELLRHPHLQPYVLRSRIASPVFLPVHLINSSPKDKTKQSPKKSSGGRDHRDKQEGLVNRLEGVHLVEGNAEVHVNNHDNDGKLTVSTCAEDILETKMVDPTSYTMENSASISGSKDGSITSDSAICSVCKEADFKGRLAKEATENEITSKSTPDSVHEKQGFATENFLQSDSTNVTTATKIEHTLPNGGLDKTDPLRDVAKPVDSCKSVMSSQDSSVGNDKDDFVDEERSSPVSQPIDLEKDTESNRSLKKIENHDASTGVSHLDCLSSASNDTLPGKVEGVATTAAHKEGDDTKTLNGITLSMPTSNGGGGTTKSVLLNRSQNRADALEALLELCAQLLKQGKLDELAAVLRPFGEDTVSSRETAIWLTKSLLSSQKFNPET 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271862g00040 639 MobiDBLite consensus disorder prediction 401 418 - -
Stsc271862g00040 639 MobiDBLite consensus disorder prediction 459 503 - -
Stsc271862g00040 639 MobiDBLite consensus disorder prediction 285 310 - -
Stsc271862g00040 639 MobiDBLite consensus disorder prediction 398 418 - -
Stsc271862g00040 639 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 6 537 - -
Stsc271862g00040 639 SUPERFAMILY Protein kinase-like (PK-like) 6 295 IPR011009 -
Stsc271862g00040 639 MobiDBLite consensus disorder prediction 546 565 - -
Stsc271862g00040 639 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271862g00040 639 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271862g00040 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Stsc271862g00040 639 MobiDBLite consensus disorder prediction 475 503 - -
Stsc271862g00040 639 MobiDBLite consensus disorder prediction 291 310 - -
Stsc271862g00040 639 CDD STKc_Nek 8 264 - -
Stsc271862g00040 639 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271862g00040 639 Gene3D Transferase(Phosphotransferase) domain 1 90 274 - -
Stsc271862g00040 639 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271862g00040 Stsc-Chr271862 357309 363240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271862g00040 15 265 MAP Kinase Kinase Kinase AT1G53570 33.984 4.33e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc271862g00040 Pkinase 2.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271862g00040 K08857 - gmx:100793379 764.222