Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271862g00023 ATGGAGTTCTCACAGGAATGGAGGTCCTTCTTCCCGATCGGAACGCCTGGTGGCTCCACCGTTGCCCCTCTTCTCCTCTCTCAACCAACCACTACCACTTTAGGCCCCCTCAAATTCAACTCTAATCCTAACTCCCTCACTCCTCTCTTTTCCTGTTCTTCTTTCTTCCCCTCTCCCCTTCACCTCCCTCCCATTCTCTCAACCTCCCGCTTTCTTTCTTCTCAATCCCTCCTCCCTTCAACTGCTTCTTCTCTCTCCTCCTTTGCCCAGAATGACGCTGTTCCCCCCTCCTCCTCCTCTTTCCTCACTAACCGCCTCCACCTCCTCACTTATCCACATCATAAAAAGGCAGTTGTTTTCTTCCCCACTGGCCCCAACGATGACAAAATTGGCTTTTTCATGCTCTCAGTTACAGACTCCAAGTTGCAACTCCACCTTGACAGAAACGACGATGTTTTCTGTGCCGAGTTGGGACCCTCATCTGCTCACCGTATACTGAAAATTTCGGTGAACCCTGTTCTTGATCCTCCTCCTTATTCAGGTTATTGTAATGATAGTGTGTGGGTGAGCTGTGAATTTAGTTGGCATCCTCGGATCTTGGTGGTTGCTCGTTCGGACGCTGTTTTCTTAGTTGACTTGAGATCCAAGGAATGTAGCGTGAGTTGCCTAATGAAGATTGACATGTTGCGTATGTATGCTCCAACCGAAAATGAGCAGTTTCTTGCATTGTCAAAGGCAGGTCCCAACCATTTCTTCTGTGCAGTGGCTTCTAGCAGTCTTTTACTTCTCATTGATGCGAGGAAGCCTATGATGCCAGTGTTACAGTGGATGCATAATATTGATGAGCCTTGCTACATAACTGTGGTAAGCTTGTCTACCTTGAGGTCCCACTCAAAGGAAGATACTTTCAAGTTGGCTTCTGAATCTGGATATTGCATTATACTGGGATCATTTTGGAATTGTGAGTTTAATCTCTTCTGCTATGGACCTGAATTGCCATTTCGAAAAGGACATATTGCTTTGAAGCTTTCAAAGATTAACAAAGCCTTTTGTGCTTGGGAACTCCCATCTGAGATCGATTTATCTGGCTACAGGTGTCATTGTGGAGATTGTCTCTTAAAGGAAGAGCTGTCAAAGGGTGCTCTTCCTGAATGGGTTGATTGGCAGCTGAAGAAAGAGATTATCTTGGGTTTTGGAATTTTGAGCAATGACCTGGCTGCCTTACTTTGTGAACCGGATGAAAATGGTGGATTTACATTGATAAGGCTATTGTCATCAGGAAAGTTTGAATTGCAAAGGTATCATGCTGGTTGGGCTCCTGCTAGGAACTTAGATTATTGGCAGAAACAAGAATTATGCGTGGACAAAAGCTTGCATCCCTTCATGGAGGAGGAGTACAAATTTCCAAAAAGATTTCATTACCTAAAATTTGCTTGGTTTGAGGCATATGTAAGTGATAGTCTTGCTAAATCGCTTCATAGGAAACTAGAAAAGATTCATATGCAAACTTACCGGAAGGAATCTTCTGCTAGTAAAGTTCATGAGGTTTTGTGTGAGAACTTAAATGCTTGTGGGTTTGGTCGGTCAAGATCATCTGCCACAACTACTTCTTTCTTTAAAGATATAAAAGCACCAGCATGCTTTTACGAAGTTACATTGAGGAGACTCTGGGCTGACATGCCTATGGAGCTATTGCAATTTGCATTTTTGAGTTATTCTGAATGTCCGCAAGTTGTAAACAAGCATAAGGTAGCTTTAAATATTTTAGCTTTACCTGATCTTCCTCAGTTGCCTCCATTCTTCTCACGGAAAACTTCATGCCACAGCAAAGATGACATTGTGGGTCCAGTTAAGCCATTTCCTTTTCTACTTGTGCTAAATGAATTATACAATGGGTGCTCAAATTTGGAAGATGATGAGTTTTCAGTAAAAGCAGAGCTTGATCTCAAGTACAATGAAGTAATGAAGGTGGCTAGTGACATCACTTTTTCAACTCATGGCTCCATGGGCCTCAATGATCATGCAGTATCTCTTTCTGATGATCAAGAGGAAGCTTGGGATGGTTCCTTGAATCGAAAATCCCTCTTGTCATATCAGCCAAATGCATTATGTTCAGGGAACTCTGGTTATAGCGATAAAATTTATGATACGTTTATATTCCGTGTCCAGAAGTCCACGGAACAGACAAAACCTCTTGGACAAGAACTATTTGTAGATCTTTCCCCTGTTGAGTTGAAGTTTAATGCTCCATTGGAAATCTCTGAAGATACAGAAGCCCTCCCGCTTCTGAGCCTCAGCCCGGCAAATCAAGGACCTAACAAAAATCATGATCATCATGTTATTCAACATGATCAAGATCAAGAAATACAAGACCATATCCTTCCTACCACCACGTCCGCCGCCATAGATGACGAGGACTCCAGGATCCATGGCGACGGACAACAACAAGAAGAAGACAACGAAGACGAAGACGAAGAGGAGGAGAAGAACAACAACAGCGTGACAGTTGCACTGCACATAGGGTTACCAAACCCTAGTGCTGCTGAGCTGGCAACAATCACCTCCATGGTATCTTCGTCTAACAATTCATCATCAATAGAGAAAGATCATCATCATCAAGAAGAAGAACAAGAAGAAGAAGGAAGTGAAGAATCACAATGTCATAAAGGGTTCTTGGGAACAAGGCTCAACAAGGGACAATACTGGATCCCAACCCCAACCCAGATTCTCATTGGTCCAACCCAATTTTCTTGCCCTGTTTGCTACAAAACCTTCAACAGATACAACAATATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAGGGTCCTGAATCTCTAAGAGGAACCCAACCAACAGGTATGCTTAGGCTTCCATGTTATTGCTGTGCACCTGGTTGTAGGAATAACATTGACCACCCAAGGTCAAAGCCATTGAAGGATTTCAGAACCCTACAAACTCATTACAAGAGGAAGCATGGCATCAAGCCTTTCATGTGCCGGAAATGCGGCAAGGCCTTTGCCGTCCGAGGCGATTGGCGCACCCATGAGAAGAATTGTGGCAAGCTTTGGTATTGTATTTGCGGTTCCGATTTTAAACACAAGAGGTCTCTCAAGGATCATATAAAGGCCTTCGGCAGTGGACACGCTGCCTTTGGGATCGACGGTGGATTATTCGAAGAGGAGGAGGAGCCGGCCTCAGAAGTTGAACAAGATAATGATGAGTTCAACCAGTAA 3243 0.4379 MEFSQEWRSFFPIGTPGGSTVAPLLLSQPTTTTLGPLKFNSNPNSLTPLFSCSSFFPSPLHLPPILSTSRFLSSQSLLPSTASSLSSFAQNDAVPPSSSSFLTNRLHLLTYPHHKKAVVFFPTGPNDDKIGFFMLSVTDSKLQLHLDRNDDVFCAELGPSSAHRILKISVNPVLDPPPYSGYCNDSVWVSCEFSWHPRILVVARSDAVFLVDLRSKECSVSCLMKIDMLRMYAPTENEQFLALSKAGPNHFFCAVASSSLLLLIDARKPMMPVLQWMHNIDEPCYITVVSLSTLRSHSKEDTFKLASESGYCIILGSFWNCEFNLFCYGPELPFRKGHIALKLSKINKAFCAWELPSEIDLSGYRCHCGDCLLKEELSKGALPEWVDWQLKKEIILGFGILSNDLAALLCEPDENGGFTLIRLLSSGKFELQRYHAGWAPARNLDYWQKQELCVDKSLHPFMEEEYKFPKRFHYLKFAWFEAYVSDSLAKSLHRKLEKIHMQTYRKESSASKVHEVLCENLNACGFGRSRSSATTTSFFKDIKAPACFYEVTLRRLWADMPMELLQFAFLSYSECPQVVNKHKVALNILALPDLPQLPPFFSRKTSCHSKDDIVGPVKPFPFLLVLNELYNGCSNLEDDEFSVKAELDLKYNEVMKVASDITFSTHGSMGLNDHAVSLSDDQEEAWDGSLNRKSLLSYQPNALCSGNSGYSDKIYDTFIFRVQKSTEQTKPLGQELFVDLSPVELKFNAPLEISEDTEALPLLSLSPANQGPNKNHDHHVIQHDQDQEIQDHILPTTTSAAIDDEDSRIHGDGQQQEEDNEDEDEEEEKNNNSVTVALHIGLPNPSAAELATITSMVSSSNNSSSIEKDHHHQEEEQEEEGSEESQCHKGFLGTRLNKGQYWIPTPTQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAFGIDGGLFEEEEEPASEVEQDNDEFNQ 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271862g00023 1080 Gene3D Classic Zinc Finger 978 1052 - -
Stsc271862g00023 1080 SUPERFAMILY beta-beta-alpha zinc fingers 885 938 IPR036236 -
Stsc271862g00023 1080 ProSiteProfiles Zinc finger C2H2 type domain profile. 1000 1020 IPR013087 -
Stsc271862g00023 1080 MobiDBLite consensus disorder prediction 865 886 - -
Stsc271862g00023 1080 SUPERFAMILY beta-beta-alpha zinc fingers 981 1020 IPR036236 -
Stsc271862g00023 1080 PANTHER TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C 1 175 IPR038801 GO:0006360
Stsc271862g00023 1080 FunFam Zinc finger protein WIP2 969 1051 - -
Stsc271862g00023 1080 ProSiteProfiles Zinc finger C2H2 type domain profile. 916 943 IPR013087 -
Stsc271862g00023 1080 MobiDBLite consensus disorder prediction 856 887 - -
Stsc271862g00023 1080 ProSitePatterns Zinc finger C2H2 type domain signature. 918 938 IPR013087 -
Stsc271862g00023 1080 MobiDBLite consensus disorder prediction 764 785 - -
Stsc271862g00023 1080 SMART c2h2final6 916 938 IPR013087 -
Stsc271862g00023 1080 SMART c2h2final6 1000 1020 IPR013087 -
Stsc271862g00023 1080 MobiDBLite consensus disorder prediction 799 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271862g00023 Stsc-Chr271862 224765 237239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271862g00023 758 1076 C2H2 Transcription Factor Family AT3G57670 64.264 4.07e-131 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc271862g00023 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271862g00023 - - adu:107473948 947.192