Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271862g00008 ATGGAATCTATCCCCCTGATCAATCTGTNNNNNNNNNNCTTGAACGACCAACAATGTACGGTCGCAACCTTCTACAACAACGGAACCCCACAATGCTCTATAATGAAAACTGTGTATGTCACCGGTTATGCAGATCCGTCTCTAAGCTCGGTGTCATTTGTTAAGAGATGCTCGGGTCCATTTGCAGTCAACCCTGGCCTCACGGAAACAAATTCATCTCCACCCAAACCGGCTCCTGGACTCTGCATTCGATGTCTAATAGGAGCTTCCTCAGGCACCCTGTTTATGTTTGCTGTTCTCCAGATTGCAATTGGATTCTACATCTACAGAAGAAGAAGCTCTACCAGGAAAATGGTTACTTCATCTTTGGAATTCCCAAACTCAAATGGCCTAATTGTCTTGTCATTTTCAGAAATTAAGAGCCTCACAGGGGATTTCAAGAGTCAGATTGGGCCGAAGATGTTCAAGGGTGTCCTACAAAACAATCACCCAGTTGCAGTAAAAGACCTGAATGCATACATCGAAGAAAGGAAGTTCCGGAGTGCTGTTATGAAGATAGGGAGCATCCACCACAGAAACCTCATGAAGCTGGAGGGTTATTGTTGCGAGTTCGACCATAGATTCTTGGTGTATGAATACGCCAGGCACGACTCATTGGACAAGTACATAGATGATTCTGCTCTTTGCAGGAAGCTAACCTGGAGAAAAAGAATTGAAATCTGCTCAAGTGTAGCAAAGGCCATAAGTTACTTGCATTCTGGTTGTAGGGAGTTCATAAGCCACGGAAACCTGAAATGCGAAAATGTCATGTTGGATGAGAACTTTGCAGCCAAGGTGACTGAATTTGGGTTCACAAGAGTAGGTGGTATGGCGACATATTGTGGATGTTCTGCCGAGAAGGACATCGAGGATTTCGGCAAGTTAGTATTGACCTTGCTGACAGGGCGCCGCAATGATGCTGAATTTTGCGAGTGGGCGTATAAAGAATGGATGGAAGAAAGGGTGACTAATGTGGTTGATAGAAGGATGGAAGGGAGTTACAATCCAGATGAAGCCGAGCGAGCATTGAGAATTGCATTCTGGTGCCTTCAAGTGGATGAACGGCGAAGACCTTCGATGGCAGAGGTGCTGAGAGTACTTGATGGTACTTTAAGTGTTGATCCTCCACCACCCCCATTTGAGTATCCTCATAGGCAATTACTGCTGGAAGATGATGATGATGATTCACAAGAAACTAGTGATGAATTCCAGGTCAATTTGTAG 1263 0.4458 MESIPLINLXXXXLNDQQCTVATFYNNGTPQCSIMKTVYVTGYADPSLSSVSFVKRCSGPFAVNPGLTETNSSPPKPAPGLCIRCLIGASSGTLFMFAVLQIAIGFYIYRRRSSTRKMVTSSLEFPNSNGLIVLSFSEIKSLTGDFKSQIGPKMFKGVLQNNHPVAVKDLNAYIEERKFRSAVMKIGSIHHRNLMKLEGYCCEFDHRFLVYEYARHDSLDKYIDDSALCRKLTWRKRIEICSSVAKAISYLHSGCREFISHGNLKCENVMLDENFAAKVTEFGFTRVGGMATYCGCSAEKDIEDFGKLVLTLLTGRRNDAEFCEWAYKEWMEERVTNVVDRRMEGSYNPDEAERALRIAFWCLQVDERRRPSMAEVLRVLDGTLSVDPPPPPFEYPHRQLLLEDDDDDSQETSDEFQVNL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271862g00008 420 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 293 388 - -
Stsc271862g00008 420 Pfam Protein tyrosine and serine/threonine kinase 160 288 IPR001245 GO:0004672|GO:0006468
Stsc271862g00008 420 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 214 292 - -
Stsc271862g00008 420 ProSiteProfiles Protein kinase domain profile. 125 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271862g00008 420 MobiDBLite consensus disorder prediction 387 420 - -
Stsc271862g00008 420 Gene3D Transferase(Phosphotransferase) domain 1 215 292 - -
Stsc271862g00008 420 Gene3D Transferase(Phosphotransferase) domain 1 293 388 - -
Stsc271862g00008 420 PANTHER OS07G0415500 PROTEIN 9 392 - -
Stsc271862g00008 420 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 110 213 - -
Stsc271862g00008 420 Gene3D Phosphorylase Kinase; domain 1 107 213 - -
Stsc271862g00008 420 SUPERFAMILY Protein kinase-like (PK-like) 155 398 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271862g00008 Stsc-Chr271862 43802 46189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271862g00008 68 391 Receptor kinase-like Gene Family AT4G05200 28.261 3.51e-41 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc271862g00008 PK_Tyr_Ser-Thr 1.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271862g00008 - - gmx:100815678 606.675