Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc270g00011 ATGGTGGCTTTTGGCGGGAAAAAGATGCGCCAAATGGTTGTTGGCTTCGGTGGAAGTGGCCTAGGCCAGGTCGTTGCCGCCGTCGCCGTCTCCTTCCTCCTTCGCCTCTTCACTTCTCCCGGTCCCGCCTTCCCTCCGGACGATGAAAATAATGACGGCGACTACGATGTGCCGGAGAACGGCATCCACGACGCCGAAGCTCCGCCATCCGGAAAGGTTACGCCGGTTACAATCCGATGGAACAACATTAATTGCTCCCTTTCCGATAAATCGTCCAAGTTCGTAAGGTTTTTGCTTAAAAATGTGAGTGGAGAAGCAAAACCTGGAAGGTTGCTAGCTATAATGGGGCCTTCGGGTTCAGGGAAGACAACTCTGCTTAATGTTCTTGCAGGCCAGTTGGCAGCATCGCCTCGGTTGCATTTGTCAGGCCGTTTGGAGTTCAATGGAAATCCGAGTTCAAGGAACACTTACAAGTTTGCTTATGTGAGGCAGGAGGATATCTTCTTCTCACAACTCACTGTCCGGGAAACATTGTCTCTTGCTATAGAACTCCAACTTCCCCATATTTCATCTGCAGAAGAGAGAGATGAATACGTGGACAATCTCCTTTTGAAACTAGGCTTGGTCAGTTGTGCTGATACCAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGCTTATCCTTGGCATGTGAACTACTTGCAAGCCCATCTGTTATATTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAAGCTGAGAAAGTCATGGAAACTCTCCAACACCTTGCACAAGATGGTCATACTGTGATTTGCTCTATACATCAGCCAAGAGGTTCAGTGTACAGTAAATTCGATGACATTGTCTTGCTAACAGAGGGTTCACTTGTTTATGCTGGTCCTGCCCATGATGAACCATTGGCATACTTCTCAAAATTTGGGTACAACTGCCCTGATCATGTGAATCCTGCTGAATTTTTGGCTGATCTTATATCTGTAGACTACAGTTCTGCTGATAGTGTTTATTCCTCTCGAAAAAGGATTGATGGTCTTGTTGAGTCATTCTCACAAAGACTATCTACATCTACTACAATATATGCAACTCCAATTACTGCAGATGAGCTCTCAAAAAGTAGAAAGAAAATCAGTAGAAGGACTATTGTGCAGAAGAAAGGGGGATGGTGGAAGCAATTTTGGTTGCTTCTTAGGCGAGCATGGATGCAGGCATCCCGAGATGTACCAACAAACAAAGTTAGAGCAAGGATGTCAATAGCGTCAGCAGTTATCTTTGGTTCAGTTTTCTGGAGAATGGGAAATTCCCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTAGCTGCAATAAATACAGCAATGGCAGCTCTCACGAAGACTGTTGGTGTGTTTCCAAAGGAACGTTCCATTGTTGATAGAGAACGTGCAAAAGGCTCCTATTCTTTGGGTCCATATTTGTTCTCAAAATTGTTAGCAGAGATTCCAATTGGAGCCTCATTTCCATTAATGTTTGGTGCTGTTTTATACCCAATGGCTCGTCTTCATCCTACTTTGCTGAGATTTGGAAAATTCTGTGGAATTGTCACCATGGAATCTTTTGCTGCATCCGCAATGGGTCTCACTGTTGGTGCTATGGTTCCAACAACCGAAGCTGCAATGGCGGTAGGCCCATCTCTTATGACAGTTTTTATTGTATTTGGAGGCTACTATGTCAATCCTGAGAATACCCCCATCATCTTCCGTTGGATTCCCAGCGCTTCTCTAATTAGATGGGCCTTTCAAGGACTTTGCATCAATGAATTTAATGGTCTACAATTTGAGCATCAGAATTCTTTTGATATTCAAACTGGAGAACAGGCACTCGAACGCCTTTCCTTTGGGAAAAGTAGGATTAGGGATACAGTGGTAGCACAAAATAGAATACTGTTCTTCTGGTATTGCACCACCTACCTTCTCCTTGAGAAAAACAAGCCTAAATACCAGCAACTTGAGCCAATCCCACTTGACCACAACAAACCGCACTTCAAACTGGAGGAGTTAAATTCTGAACAAGCTGAACAGATCCTTGAATCTCAACCTGTCAGCCAAGATGGATCCAACCAGCCTGTTGAATCACCTGAAGTGGATCCTATTGGCCCATTTGTCTTGGAAGGTACTAAGTAA 2199 0.4452 MVAFGGKKMRQMVVGFGGSGLGQVVAAVAVSFLLRLFTSPGPAFPPDDENNDGDYDVPENGIHDAEAPPSGKVTPVTIRWNNINCSLSDKSSKFVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLSGRLEFNGNPSSRNTYKFAYVRQEDIFFSQLTVRETLSLAIELQLPHISSAEERDEYVDNLLLKLGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLQHLAQDGHTVICSIHQPRGSVYSKFDDIVLLTEGSLVYAGPAHDEPLAYFSKFGYNCPDHVNPAEFLADLISVDYSSADSVYSSRKRIDGLVESFSQRLSTSTTIYATPITADELSKSRKKISRRTIVQKKGGWWKQFWLLLRRAWMQASRDVPTNKVRARMSIASAVIFGSVFWRMGNSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERSIVDRERAKGSYSLGPYLFSKLLAEIPIGASFPLMFGAVLYPMARLHPTLLRFGKFCGIVTMESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPSASLIRWAFQGLCINEFNGLQFEHQNSFDIQTGEQALERLSFGKSRIRDTVVAQNRILFFWYCTTYLLLEKNKPKYQQLEPIPLDHNKPHFKLEELNSEQAEQILESQPVSQDGSNQPVESPEVDPIGPFVLEGTK 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc270g00011 732 CDD ABCG_EPDR 75 306 - -
Stsc270g00011 732 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 71 631 - -
Stsc270g00011 732 SMART AAA_5 108 301 IPR003593 GO:0016887
Stsc270g00011 732 MobiDBLite consensus disorder prediction 698 715 - -
Stsc270g00011 732 MobiDBLite consensus disorder prediction 698 732 - -
Stsc270g00011 732 Pfam ABC-2 type transporter 403 613 IPR013525 GO:0016020|GO:0140359
Stsc270g00011 732 Gene3D - 71 314 IPR027417 -
Stsc270g00011 732 Pfam ABC-2 type transporter 281 338 IPR043926 GO:0140359
Stsc270g00011 732 FunFam ABC transporter G family member 7 76 314 - -
Stsc270g00011 732 Pfam ABC transporter 99 251 IPR003439 GO:0005524
Stsc270g00011 732 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524|GO:0016887
Stsc270g00011 732 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 78 324 IPR003439 GO:0005524
Stsc270g00011 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 310 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc270g00011 Stsc-Chr270 41689 47715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc270g00011 98 391 Calmodulin-binding Proteins AT2G36910 25.658 2.90e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc270g00011 K05681 - gmx:100788256 1249.57