Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc26g00028 ATGTTGTTTTTGGCACTATTATTGCCTCTATCAGTGTGGTCCAAAGCTAATGATAGTAAACATCATGAAAGAGGAGGAAGCAATAGCTGTATAGACAAGAAGATTGTGAACATTGGAGTTGTAATCAAAGACTTCCACTCTCAAATCCAAATGGAACAGAAGATAGCTATGAAAATTGCTGTCAAAGATGTTCATAGCTTCTTGAATTGTTACAAGCTTGTCTTGAACTTCAACGATTCTCATTGGAATCCTTCTACTATGGTGGCAGCTGCTGTCATAGGATCAAAACTTGATGGAGCAACATTAGTCAATGAGATTCATCAAAGATCAAAGGAAATTCCAATCTTATCCCTAACATCAAGTTCAGAAATAAGGCAAATTCCATTGCCAAACTTCATGCAAATAGGTAACAATGACATTACCTTAAACTTGCAATGTGTTGCAGCCATAGTAGGTGAATTCAGTTGGAGAAAAGTGACAGCAATTTATGAACATGACAATGGATTCACCTCTTATGATTCAGATATACTAACAAAGCTCTCATATTCTCTTAGCCATGTTAACTCTGAGATTGAAAACTATGTTGCTTTTCCTTCAATGAACACCCTTTTAGACCCCAAAACAGCTATAGAACATGAACTTAAGAAGCTCAAGAACAAGAGCTATAACAGGGTTTTCTTGATTCTACAATCTTCATTAGAGTTTGCAACTATGCTATTCGAGAAAGCGAATCGGATGGGGTTGATGGAAAAAGGGTCAGTGTGGATCATCACAGATGGCATAGCTAGCCATCTTGATTCAATGGAATATTCCTCTGTCACCTTCAATATGCAGGGTGTTCTTGGGTGCAAAACGAGCTTCGTCGAGACGAGCCAAGCATTCAAACGGTTCAAATTCGCGTTCCGGCGCGAGTTTGAGTTGGAATATCCTGAGGGAGGAGGAATGGAAAACCCCTATCCAAGTCTCTTAGCTCTTAAGGCTTATGATGCTATTTGGATCATTGCTCATGCTCTAAGAAAATTAGAGTCACAAGGGAACTTTTCCATGGAAGAGTTATCAAAGAATGTTGTAGCCACAAACTATGAGGGGCTAAGTGGTAAAATAAGCTTCAAAGATGGAAAATTGTTGGAACCACCAACATTTAAGATTGTCAATGTTATTGGAAGAAGTTACAATGAGTTAGCATATTGGTCGCCGGAATCCGGTTTCTCGGAGAACCTTGCCAACCAAGTTATTAGTCCAACCTCTGCTTCTTCTGGTAGAGTACTTTTAAGTAATGCGAATTGGCCGGGCGGATCGAAAACGGTGCCGAAAGGTTGGGTTTATAGCAATGAAGGAAGGAGGAGTTTGAAGATTGGTGTCCCTGCTGGGGATCCATGTCCTCAGTTTGTGAATGTGAGTTATGATGAGAGGCTAAATCAAACACATATCACTGGTTTCTCAATCCATGTCTTTGAAGCAGTTGTGAAGAATTTACCTTATCAGCTTCCTTATGAATTTGTCCCATTCTATGGATCTTATGATGACATTGTTGTGCAAGTGAACAATAAGGTTTTTGATGCTGCTGTTGGTGATATTCAAGTAATTGAGCAAAGATATGCATATGCTGAATTCTCTCATCCATATATTCCATCTGGAGAACCTGTGAAAACCAACTTGGCCAGAGCAGTGCTAGCACCATGGTTGTTTGCAATTCTGATAGTGACAGCATGTTTCACAGCAAGCCTCTCATCAATGATGACAGTCTCTCATCTTGAACCATCTGTGCCTGATATTCAAACATTGCTGAGAACCAATGCAGTTGTAGGATGCAATAAGAACACATTTTTGGTTCATTACTTAGTTAATGAACTGAAATTCAAGCCTGAGAATGTTAGGGGCTTTGATTCAATTAGTGATTTTCCAAGGGCTTTTGAGAATAAAGAAATTGAAGCAGCTTTCACTATTGCTCCTCATGCTGAAGTCTTTCTTGCTACACATTGTAAGGGATATATCAAAGCAGGACCTACCTTAAAGCTTGGAGGATTAGGCTTTGCATTTCTGAAAGGTTCAGCCCTAGCAATTGATATATCAAGAGCAACATTGAAAGCAATTGAAAGTGGAGAAGTAGACAAACTAGAACAACAAATGTTGTCTAGAACCACTTGTGGATCTACAAATAGCAACATTCAAAATGATGAACTTGGTCCTCAACCATTCTTTGGTCTATTTGGAATTTGTGGAGGCATTGCTTCCTTTGGTTTCTTAGCCTCAATGGTTCCTCTAATTAGAAAGAAGGGAAAGGGAATTCTCAACTATTTAGAAGGTAAAATAATATCATTGTTACAAAGAGGATTAGGTAATGCCGCCGGTTTAACTGGCGCGATACACTTCAACGAATGCCGCCGGGTTTTGCAGCGGCACCCCTGCTCCGTTGTCAATGCAGGATCGTCATTCGAGGGAGAGGGGGTGCCGCTAGGTTCATTGACGGCATTGGTGGGATTGGATGCCACTGGTTCTTCTGGCGGCACTAGTTCAATACAATGCCACCAGTTAATCTGGCGGCACTGGTTCGGCTGA 2559 0.4048 MLFLALLLPLSVWSKANDSKHHERGGSNSCIDKKIVNIGVVIKDFHSQIQMEQKIAMKIAVKDVHSFLNCYKLVLNFNDSHWNPSTMVAAAVIGSKLDGATLVNEIHQRSKEIPILSLTSSSEIRQIPLPNFMQIGNNDITLNLQCVAAIVGEFSWRKVTAIYEHDNGFTSYDSDILTKLSYSLSHVNSEIENYVAFPSMNTLLDPKTAIEHELKKLKNKSYNRVFLILQSSLEFATMLFEKANRMGLMEKGSVWIITDGIASHLDSMEYSSVTFNMQGVLGCKTSFVETSQAFKRFKFAFRREFELEYPEGGGMENPYPSLLALKAYDAIWIIAHALRKLESQGNFSMEELSKNVVATNYEGLSGKISFKDGKLLEPPTFKIVNVIGRSYNELAYWSPESGFSENLANQVISPTSASSGRVLLSNANWPGGSKTVPKGWVYSNEGRRSLKIGVPAGDPCPQFVNVSYDERLNQTHITGFSIHVFEAVVKNLPYQLPYEFVPFYGSYDDIVVQVNNKVFDAAVGDIQVIEQRYAYAEFSHPYIPSGEPVKTNLARAVLAPWLFAILIVTACFTASLSSMMTVSHLEPSVPDIQTLLRTNAVVGCNKNTFLVHYLVNELKFKPENVRGFDSISDFPRAFENKEIEAAFTIAPHAEVFLATHCKGYIKAGPTLKLGGLGFAFLKGSALAIDISRATLKAIESGEVDKLEQQMLSRTTCGSTNSNIQNDELGPQPFFGLFGICGGIASFGFLASMVPLIRKKGKGILNYLEGKIISLLQRGLGNAAGLTGAIHFNECRRVLQRHPCSVVNAGSSFEGEGVPLGSLTALVGLDATGSSGGTSSIQCHQLIWRHWFG 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc26g00028 852 Pfam Bacterial extracellular solute-binding proteins, family 3 474 709 IPR001638 -
Stsc26g00028 852 SMART GluR_14 449 713 IPR001320 GO:0015276|GO:0016020
Stsc26g00028 852 FunFam Glutamate receptor 143 314 - -
Stsc26g00028 852 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 546 IPR015683 -
Stsc26g00028 852 SUPERFAMILY Periplasmic binding protein-like I 53 440 IPR028082 -
Stsc26g00028 852 Gene3D - 140 310 - -
Stsc26g00028 852 Gene3D - 449 560 - -
Stsc26g00028 852 Pfam Ligand-gated ion channel 710 741 IPR001320 GO:0015276|GO:0016020
Stsc26g00028 852 SUPERFAMILY Periplasmic binding protein-like II 447 709 - -
Stsc26g00028 852 CDD GluR_Plant 450 711 - -
Stsc26g00028 852 Pfam Receptor family ligand binding region 38 387 IPR001828 -
Stsc26g00028 852 Gene3D - 323 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc26g00028 Stsc-Chr26 184620 191254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc26g00028 26 707 Ion Channels AT4G31710 27.573 8.34e-64 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc26g00028 - - gmx:100781045 623.239