Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc268g00016 ATGGAGACGAAAAACCCTTCGAGGTTCACGCTGGGGAAGCAGTCATCGATGGCACCAGAACGCCACAGAGAAGCTGGATCAGACCTCCACAATGACGGTGATGGCGAGGAAGGTATCCATCCGGGTGTGAGGTTGATGTATTCGGCGAACGAGGGCGATCTTGATGGTATTCGTGAAGTGTTGGATTCAGGTGTGAGCGTCAATTTCAGGGACATTGATGACCGCACTGCACTTCACGTTGCTGCGTGTCAGGGATTAACCGATGTGGTTGCTTTGTTGCTCGAGAAAGGAGCTGAGGTCGATGCCAAAGATCGCTGGGGGAGCACGCCGCTTGCAGATGCTATATTTTATAAAAACAATGACGTGATCAAACTATTGGAGAAGAGTGGAGCAAAGCCTCTGATGGCTCCTATGCATGTTAATCATGCACGTGAAGTACCAGAATATGAAATCAATACTAAAGAACTTGATTTCACCAATAGTGAGGAGATAACAAAGGGGACTTTCTGTAGTGCAATTTGGCGTGGGACAGAGGTCGCAGTGAAAAAACTTGGGGAGGATGTAATTACTGATGAGGAGAAAGTGAAGGCCTTCAGAGATGAGCTTGCACTATTCCTGAAGATCCGGCATCCAAATGTAGTTCAGTTTCTGGGGGCTGTGACACAGAGTAGCCCAATGATGATCGTGACAGAATATCTTCCAAAGGGCGATCTCCGTGCATTCTTGGGAAGAAAAGGAGCTCTGAAACCATCAACAGCTGTCAAATTTGCACTTGATATTGCCAGGGGAGTGGGTTATTTACATGAGAATAAGCCATCACCAATCATTCACCGTGATCTTGAGCCTTCTAATATATTGCGGGATGATTCGGGACACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTTGCAGTTAAAGAAGACAGACCTCTAACTTGCCAAGATACTTCTTACATGCCCTTTCATGGACTAATTAGGAAGTTGTTGATTTTGTTGATAGGCCGCTATGTTGCTCCTGAAGTTTTCAAACAAGAAGAATATGACACCAAAGTAGATGTATTCTCGTTTGCACTAATCCTGCAAGAGATGATTGAAGGTTGCCCACCATTTTCCGCAAAGAAGGATGAGGAGGTTCCTAAGGTATATGCTGCAAAAGAGCGCCCACCTTTTCGAGCTCCCGCCAAGCGTTATGCCCATGGGATTAGAGAATTGATTGAAGAGTGCTGGAATGAAAATCCAGAAAAGAGACCAAGTTTTAGACAAATAATACCAAGGCTGGAATCCATCTACTACACTATTGGTCAAAAAGGACGTTGGAAGGTTAAACCATTGAAATGCTTCCAGAACCTGGAGGCCTTGTTGAAGAGGGATCGTTCAAATTTTAGCAGCCGAGGCAGTTCATCGCATTCGAGGTCCAGCCGAATATGA 1431 0.4549 METKNPSRFTLGKQSSMAPERHREAGSDLHNDGDGEEGIHPGVRLMYSANEGDLDGIREVLDSGVSVNFRDIDDRTALHVAACQGLTDVVALLLEKGAEVDAKDRWGSTPLADAIFYKNNDVIKLLEKSGAKPLMAPMHVNHAREVPEYEINTKELDFTNSEEITKGTFCSAIWRGTEVAVKKLGEDVITDEEKVKAFRDELALFLKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRAFLGRKGALKPSTAVKFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDRPLTCQDTSYMPFHGLIRKLLILLIGRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKKDEEVPKVYAAKERPPFRAPAKRYAHGIRELIEECWNENPEKRPSFRQIIPRLESIYYTIGQKGRWKVKPLKCFQNLEALLKRDRSNFSSRGSSSHSRSSRI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc268g00016 476 PIRSF ILK 1 450 - -
Stsc268g00016 476 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Stsc268g00016 476 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Stsc268g00016 476 ProSiteProfiles Protein kinase domain profile. 158 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc268g00016 476 MobiDBLite consensus disorder prediction 17 39 - -
Stsc268g00016 476 SUPERFAMILY Ankyrin repeat 44 135 IPR036770 -
Stsc268g00016 476 FunFam serine/threonine-protein kinase STY46-like 151 234 - -
Stsc268g00016 476 Gene3D - 38 142 IPR036770 -
Stsc268g00016 476 FunFam Integrin-linked protein kinase family 25 149 - -
Stsc268g00016 476 SUPERFAMILY Protein kinase-like (PK-like) 139 428 IPR011009 -
Stsc268g00016 476 Gene3D Transferase(Phosphotransferase) domain 1 143 449 - -
Stsc268g00016 476 Pfam Ankyrin repeats (3 copies) 45 133 IPR002110 GO:0005515
Stsc268g00016 476 FunFam Os01g0748600 protein 144 447 - -
Stsc268g00016 476 SMART ANK_2a 37 69 IPR002110 GO:0005515
Stsc268g00016 476 SMART ANK_2a 106 135 IPR002110 GO:0005515
Stsc268g00016 476 SMART ANK_2a 73 102 IPR002110 GO:0005515
Stsc268g00016 476 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 136 435 - -
Stsc268g00016 476 Pfam Protein tyrosine and serine/threonine kinase 172 427 IPR001245 GO:0004672|GO:0006468
Stsc268g00016 476 CDD STKc_MAP3K-like 164 427 - -
Stsc268g00016 476 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc268g00016 Stsc-Chr268 48115 52257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc268g00016 8 448 MAP Kinase Kinase Kinase AT4G18950 66.063 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Stsc268g00016 PK_Tyr_Ser-Thr 3.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc268g00016 - - gmx:100790126 759.599