Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc268g00010 ATGGCAACAAGTTCAAGTTCATCAAGTTCAAGCAACAAAGCCAAAGCCATAGGCATTGATCTTGGCACAACTTATAGCTGTGTCGCAGTTTGGCAGAACAATCATGTTGACATCATTCCAAACAAACAAGGCAACCGCACCACACCTTCTTGCATTTCATTCACAGACACTCAAATATTACTAGGCGATGCAGCCATTAACCAACTCTCCTCGAACCCACACAGAACTGTCTACGATGCTAAACGCATGATCGGTCGCACCTTCAATGATCTGTCAGTTCAAGAGGACATGAAGCTCTGGCCTTTTAAGGTTGTCCCTCACCCTACCAACAACAACAATCCAGCCATTCTTGTTGACAATAAGTGTGAACTTACTTACTGTGCACCCGTAGAGATCTCTGCCATGGTGCTCAACACGCTGAAGGAGGGTGCTGAAGCTTATTTAGGCCATCCTGTGAATGATGCAGTCATCACTGTCCCTGCTTACTTCAACAACTCTCAGAGACAAGCCACCAAAGACGCCCCGAAGATCGCGGGCCTTAACGTTATGGCGATCATAAACGAGCCTACTGCTGCTGCCATTGCTTATGGCTTCGACAAGAAGACTTGGAGGGAAGGTGAGAGGGATGTGCTTGTGTTTGATCTTGGTGGCGGCACTTTCGATGTTTCATTGGTGACAATTGATGAAGGGATGTTCAAGGTGAAGGCCACTTTGGGAGACACACATTTGGGAGGTCTGGATTTTGATAACAAAATGGTGAACCATTGTGTTGAATTTTTTAAAGGGAAATACAACAAGGACATTAGTGGGAATCTGAAAGCTTTGGGGAGGTTAAGGTCACATTGTGAGAGAGCCAAGAGGAATCTCTCTTCCAATTCACATACAAGAATTGAAATTGATGCTTTATATGAAGGTATTGATCTAAACCTCACTGTTACTAGAGCTGCATTTGAGGAACTGAACAAAGACTTGTTCAACAAGTGCATGGAGATGGTGAAGAACTGCCTAATTGAGGCTAAGGTTGATAAAAGGCAAGTACATGAGATTGTTCTAGTTGGTGGCTCTACAATAATTCCAAAAGTTCAGCAACTCTTGAAGGAGATGTTCTGTGTCAATGGTAGGGTTAAGGAGCTTTGCAAAAGCATCAATGCTGATGAGGCCGTGGCGCATGGTGCTGCGGTTCAGGCAGCAATGTTGAGTGGTGAAAAAGACAAGAAAGTGGAGGAGCTCTTGTTGCTTGATGAGTTGCCGCTAAGCCTTGGAATTGAAGCTTCCGATGGAAGGTTGAGACCAGAAGAGTTGAATAGAATGGTGAGAGATGCAGAGAGGTTTAAGGAAGATGATGAGGAAGTAAAGAAGAAGGAGAAGGCAAAAAACTCGTTTGAAAAGTATGCATACGAAGTGAGGGACAAATTGAAGAAGCTAAAGAAGACAGGGGAGGAGGCAATAGAATGGTTAGAGAGGAACTAG 1470 0.4429 MATSSSSSSSSNKAKAIGIDLGTTYSCVAVWQNNHVDIIPNKQGNRTTPSCISFTDTQILLGDAAINQLSSNPHRTVYDAKRMIGRTFNDLSVQEDMKLWPFKVVPHPTNNNNPAILVDNKCELTYCAPVEISAMVLNTLKEGAEAYLGHPVNDAVITVPAYFNNSQRQATKDAPKIAGLNVMAIINEPTAAAIAYGFDKKTWREGERDVLVFDLGGGTFDVSLVTIDEGMFKVKATLGDTHLGGLDFDNKMVNHCVEFFKGKYNKDISGNLKALGRLRSHCERAKRNLSSNSHTRIEIDALYEGIDLNLTVTRAAFEELNKDLFNKCMEMVKNCLIEAKVDKRQVHEIVLVGGSTIIPKVQQLLKEMFCVNGRVKELCKSINADEAVAHGAAVQAAMLSGEKDKKVEELLLLDELPLSLGIEASDGRLRPEELNRMVRDAERFKEDDEEVKKKEKAKNSFEKYAYEVRDKLKKLKKTGEEAIEWLERN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc268g00010 489 Gene3D - 429 489 IPR029048 -
Stsc268g00010 489 SUPERFAMILY Actin-like ATPase domain 15 200 IPR043129 -
Stsc268g00010 489 ProSitePatterns Heat shock hsp70 proteins family signature 1. 19 26 IPR018181 -
Stsc268g00010 489 Gene3D Actin; Chain A, domain 4 245 327 - -
Stsc268g00010 489 FunFam heat shock 70 kDa protein-like 78 135 - -
Stsc268g00010 489 SUPERFAMILY Actin-like ATPase domain 205 401 IPR043129 -
Stsc268g00010 489 Gene3D - 78 135 - -
Stsc268g00010 489 ProSitePatterns Heat shock hsp70 proteins family signature 3. 349 363 IPR018181 -
Stsc268g00010 489 Pfam Hsp70 protein 16 428 IPR013126 GO:0005524|GO:0140662
Stsc268g00010 489 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 429 487 IPR029048 -
Stsc268g00010 489 Gene3D - 201 379 - -
Stsc268g00010 489 PRINTS 70kDa heat shock protein signature 409 428 - -
Stsc268g00010 489 PRINTS 70kDa heat shock protein signature 43 55 - -
Stsc268g00010 489 PRINTS 70kDa heat shock protein signature 15 28 - -
Stsc268g00010 489 PRINTS 70kDa heat shock protein signature 65 73 - -
Stsc268g00010 489 PRINTS 70kDa heat shock protein signature 382 402 - -
Stsc268g00010 489 PRINTS 70kDa heat shock protein signature 218 228 - -
Stsc268g00010 489 PRINTS 70kDa heat shock protein signature 155 175 - -
Stsc268g00010 489 Coils Coil 469 489 - -
Stsc268g00010 489 Gene3D - 17 397 - -
Stsc268g00010 489 FunFam Heat shock protein 70 17 207 - -
Stsc268g00010 489 FunFam Heat shock 70 kDa 244 327 - -
Stsc268g00010 489 ProSitePatterns Heat shock hsp70 proteins family signature 2. 212 225 IPR018181 -
Stsc268g00010 489 PANTHER HEAT SHOCK PROTEIN 70KDA 16 426 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc268g00010 Stsc-Chr268 29876 32150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc268g00010 9 489 Calmodulin-binding Proteins AT5G02500 59.192 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc268g00010 K03283 - gmx:121173324 558.14