Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc268g00009 ATGGCAACAAGTTCAAGCAACAGAGCCAAAGCCATAGGCATTGATCTTGGCACAACTTATAGCTGTGTCGCAGTGTGGCAGAACAACCACGTTGACGTCATTCCAAATGAACAAGGCAACCGCACCACACCTTCTTGCGTTTCATTCACTCACACTCAAAGATTACTAGGCGATGCAGCCATTAACCAACTCTCCTTGAACCCACACAACACTGTCTTCGATGCTAAACGCTTGATCGGTCGCACCTTCAATGATCACTCACTTCAACACGACATTAAGCTCTGGCCTTTTAAGGTTGTCCCTCACCCTACCAACAACAACAGGCCAGCCATTCTTGTTGACTATAAGTGTGAACACAGATACCTTGCTCCCGAAGAGGTCTCTTCCATGGTGCTCTTCAAGATGAAGCAGGTTGCTGAAGCTTATTTAGGCCATTCTGTGAATGATGCAGTCATCACTGTCCCTGCTTACTTCAACAACTCTCAGAGACAAGCCACCAAAGACGCCGGAGAAATCGCCGGTCTTAACGTTTTGAGGATCATAAACGAGCCTACTGCTGCTGCCATTGCTTATGGCTTCGACAAGAAGACTTGGAGGGAAGGTGAGAGGAATGTGCTTGTGTTTGATCTTGGTGGAGGCACTTTCGATGTTTCATTGGTGACAATTGATGAAGGGATGTTCAAGGTGAAGGCCACTTTGGGAGACACACATTTGGGAGGTGAGGATTTTGATACCAAAATGGTGAATCATTGTGTTGAATTGTTTAAAAGGAAATACAACAAGGACATCAGTGGGAATCTGAAAGCTTTGAGGAGGTTAAAGTCACATTGTGAGAGAGCCAAGAGGAATCTCTCTTCCAATTCACAAACAAGAATCGAAATCGATGCTTTATATGAAGGTATTGATCTAAACCTCACTGTTACTAGAGCTGCATTTGAGGAACTGAACAAAGACTTGTTCAACAAGTGCATGGACACAGTGAAGAACTGCCTAATTGAGGCTAAGGTTGATAAAAGGCAAGTACATGAGATAGTTCTAGTTGGTGGCTCTACTAGAATTCCAAAAGTTCAGCAACTCTTGAAGGAGATGTTCTGTGTCAATGGGAGGGTGAAAGAGCTTTGCAAAAGCATCAATGCTGATGAGGCCGTGGCTTATGGTGCTGCAGTTCAGGCAGCAATATTGAGTGGTGAAAGAGACAAGAAAGTGGAGGAGCTCTTGTTGCTTGATGTATTGCCGCTAAGCCTTGGAATTGAAGCTTCCGGTGGAGCCATGTCGGTTTTGATTCCTAAGAACACAACGATTCCCACCAAGAAAGAGAGGGTTTTTTCTACTTCATATGAGGACCAAAGCAGTGCTATGATCAAAATCAAAGTGTTTGAAGGAGAAGAACCAAAGACAATGGATAACATCTTTCTTGGGAAGCTTGAACTGCAAGCACCAAAAGGAACCTCACAGATCAACGTTTGCTTTGATATAAACATTGATGGCATTCTTGAGGTCACTGCTGAAGACATGGCTTCGAGGGTGAAGAAAACTATCACTATCAACAACTGGAATGGAAGGTTGAGACCAGAAGAGTTGGAGAGAATGGTGAGAGATGCAGAGAGGTTTAAGGAAGATGATGAGGAAGTAAAGAAGAAGGAGAAGGCAAAGAACTCGCTTGAAAACTATGCATACGAAATGAAGGACAAATTGAAGAAGCTAGAGAAGACAGTGGAGGAGGCAATAGAATGGTTAGAGAGGAACCAGTTAGCAGAAGCAGAAGAATTTGAGTACAGAAAACAAGAATTGGAAAATGATCTGAAATCAGATCTTGTGTCCAATCTTGTTCCAAACTCTGATGAGTCCAAGGTTCCAATACGGTGCAATTGGAGTGTTCCACCAAGTGGATGGGTTTGTCTCAACACCCATGGTTCAGTGTTTCAGAACAGAAACAATAACAACAAAGCAGCATGTGGGGGTCTCGTTCGAGATTCCACAGGTTGTTTCCTAGGTGGTTTTTCAGTTAAGCTAGATAATAACATATCAGTTACAATGGCAGAGTTGTGGGGTGTTGTTCATGGACTCAATCTGGCTTGGGATCTCGGGTGTAGAAAAGTGAAGGTAGATATTGATTCTGGAAATGCTCTTGGATTGGTGAAGAATTGTCCTGTGGCTAGTGATCCTGCATTTGGATTGGTTTTTGAGATTAATGCTCTTGTGAGAAGAGATTGGTTGGTGGAATTCTCTCATATAGTCAGAGAATCTAATTGTGCTGCTGATAAAATGGCTCATTTGGGACACACTTTGGATTCAGGTCTTTGTGTGAGGCGGTTCATGGAGGCACCCTCTGCTGTTGTTGACATTCTTAATGATGATGCTACTGGTGTTTTCTTGCAACGTGGTGTTCATGCTCATTAG 2400 0.4338 MATSSSNRAKAIGIDLGTTYSCVAVWQNNHVDVIPNEQGNRTTPSCVSFTHTQRLLGDAAINQLSLNPHNTVFDAKRLIGRTFNDHSLQHDIKLWPFKVVPHPTNNNRPAILVDYKCEHRYLAPEEVSSMVLFKMKQVAEAYLGHSVNDAVITVPAYFNNSQRQATKDAGEIAGLNVLRIINEPTAAAIAYGFDKKTWREGERNVLVFDLGGGTFDVSLVTIDEGMFKVKATLGDTHLGGEDFDTKMVNHCVELFKRKYNKDISGNLKALRRLKSHCERAKRNLSSNSQTRIEIDALYEGIDLNLTVTRAAFEELNKDLFNKCMDTVKNCLIEAKVDKRQVHEIVLVGGSTRIPKVQQLLKEMFCVNGRVKELCKSINADEAVAYGAAVQAAILSGERDKKVEELLLLDVLPLSLGIEASGGAMSVLIPKNTTIPTKKERVFSTSYEDQSSAMIKIKVFEGEEPKTMDNIFLGKLELQAPKGTSQINVCFDINIDGILEVTAEDMASRVKKTITINNWNGRLRPEELERMVRDAERFKEDDEEVKKKEKAKNSLENYAYEMKDKLKKLEKTVEEAIEWLERNQLAEAEEFEYRKQELENDLKSDLVSNLVPNSDESKVPIRCNWSVPPSGWVCLNTHGSVFQNRNNNNKAACGGLVRDSTGCFLGGFSVKLDNNISVTMAELWGVVHGLNLAWDLGCRKVKVDIDSGNALGLVKNCPVASDPAFGLVFEINALVRRDWLVEFSHIVRESNCAADKMAHLGHTLDSGLCVRRFMEAPSAVVDILNDDATGVFLQRGVHAH 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc268g00009 799 Coils Coil 551 600 - -
Stsc268g00009 799 CDD RNase_H_like 634 758 IPR044730 -
Stsc268g00009 799 FunFam Heat shock 70 kDa 239 322 - -
Stsc268g00009 799 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 399 550 IPR029047 -
Stsc268g00009 799 SUPERFAMILY Actin-like ATPase domain 202 394 IPR043129 -
Stsc268g00009 799 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 550 599 IPR029048 -
Stsc268g00009 799 SUPERFAMILY Ribonuclease H-like 630 757 IPR012337 -
Stsc268g00009 799 FunFam Heat shock protein 70 12 203 - -
Stsc268g00009 799 FunFam heat shock 70 kDa protein-like 73 130 - -
Stsc268g00009 799 FunFam Heat shock 70 kDa protein 398 551 - -
Stsc268g00009 799 Gene3D - 551 608 IPR029048 -
Stsc268g00009 799 PRINTS 70kDa heat shock protein signature 150 170 - -
Stsc268g00009 799 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc268g00009 799 PRINTS 70kDa heat shock protein signature 377 397 - -
Stsc268g00009 799 PRINTS 70kDa heat shock protein signature 483 499 - -
Stsc268g00009 799 PRINTS 70kDa heat shock protein signature 404 423 - -
Stsc268g00009 799 PRINTS 70kDa heat shock protein signature 213 223 - -
Stsc268g00009 799 PRINTS 70kDa heat shock protein signature 10 23 - -
Stsc268g00009 799 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc268g00009 799 ProSitePatterns Heat shock hsp70 proteins family signature 3. 344 358 IPR018181 -
Stsc268g00009 799 Pfam Reverse transcriptase-like 644 758 IPR002156 GO:0003676|GO:0004523
Stsc268g00009 799 Gene3D - 196 374 - -
Stsc268g00009 799 Pfam Hsp70 protein 11 600 IPR013126 GO:0005524|GO:0140662
Stsc268g00009 799 Gene3D Actin; Chain A, domain 4 240 322 - -
Stsc268g00009 799 ProSitePatterns Heat shock hsp70 proteins family signature 2. 207 220 IPR018181 -
Stsc268g00009 799 SUPERFAMILY Actin-like ATPase domain 10 195 IPR043129 -
Stsc268g00009 799 ProSitePatterns Heat shock hsp70 proteins family signature 1. 14 21 IPR018181 -
Stsc268g00009 799 Gene3D - 73 130 - -
Stsc268g00009 799 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 401 555 IPR029047 -
Stsc268g00009 799 PANTHER HEAT SHOCK PROTEIN 70KDA 11 574 IPR013126 GO:0005524|GO:0140662
Stsc268g00009 799 Gene3D - 632 761 IPR036397 GO:0003676
Stsc268g00009 799 Coils Coil 527 547 - -
Stsc268g00009 799 Gene3D - 12 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc268g00009 Stsc-Chr268 25416 28318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc268g00009 1 598 Calmodulin-binding Proteins AT1G16030 64.448 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc268g00009 K03283 - gmx:100795699 1072