Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc267g00007 ATGTATTGTGATGGTTGCAATTGCACAAATTGTCAAAACAATGTGGATAATGAGGCAGCTAGAAAGGAGGCTGTTGGACTAACATTAGAACGCAATCCAAATGCTTTCAGACCAAAAATCGCTAGCAGTCCCCAAGAAACTCGTGATTCCAAGGAAGATGTGTCTGAAATTCAAGTAGTTGGAAAGCACAATAAAGGATGTCACTGTAAAAAATCAGGTTGCCTTAAGAAGTATTGCGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGCAAATGCATGGACTGCAAGAATTTTGAAGGAAATAATGAAAGAAGAGCAAGTTTTCATGAAGAATGTAATATGTTTCGCGTCAAACAGGAAGCAAATGCTGCCATCAGTGGAGCAGTTGGTTCCTCTGGCTATGGGACTGGAACTGCCATAACACCCAAGAAAAGAAAAATTCATGAAATATTTTCTGCCAAATCATCAACAGAAAAAACTGTTTCCCGAACAACTCAATATCAACAGGAAACTGATCCTATTGTTAAACCACCTACATCTCAGTTAACTTCCTTTTCTGCTGACACTGCCAACACTAGAAATGCAGGATATTCAAGATCTACTTACAGGTCACCATTGGCGGATGTCCTCCAGCCACAAAATGTGAAGAATCTATGTTCACTTTTTGTTGTTCTCTCAGGAGTAGCTGCTAAGACAAATGCAGAAATGAGAGGCAAAGTAGGCCAGAACATTGAGGCTGGGAAATTTGAAGCTTCTGTTCCTTCATCAATTCATTTGCTGCAAGACAGTGAAGATGTCCACAACTTTGTATGTGATAATGGTAAAGAAGAAGTAGGTGGAGTTGATATTGAGTGTTACAATAGGCCACTGTCACCAGAAACGCTATCACTGATGTGTGATGAACAAGATGAGGTGTTTTTCAATAAAGGTTCTGCAAACAGAGTGGCATGCAACAATTCTCAAAGCATTGTTCAAAAGCCATCTACTTCTGATGAATACCCTGATGTGTATGGAGAGAAAGAAAGGGTTGTCCTCACGAAGTTCTGGGATGTTCTACGTGGACTCATTACGGTTGGAAGCATAAAAGAAACAATGTGCTCGTCATTAGCCAAGAAAGAAGACGGAAGCAAGGAAGAACCTGCAACCAACGGCAACAGTAATGGTGCTGAAACTGATATAGGGAGTGAAAAGAAGGAAACTCCCAGCAACTGTGTTGCAAAGTGCCCCATGCCATCACCGGCCATTGAAATATCTCAAAAAAAGCTTGCAATGATCAATGGCAGTGGTGATCTTGATCTCTCATTAAGGGTTACTTGCCAATTTGATGGAAGGGGATGA 1344 0.4092 MYCDGCNCTNCQNNVDNEAARKEAVGLTLERNPNAFRPKIASSPQETRDSKEDVSEIQVVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGNNERRASFHEECNMFRVKQEANAAISGAVGSSGYGTGTAITPKKRKIHEIFSAKSSTEKTVSRTTQYQQETDPIVKPPTSQLTSFSADTANTRNAGYSRSTYRSPLADVLQPQNVKNLCSLFVVLSGVAAKTNAEMRGKVGQNIEAGKFEASVPSSIHLLQDSEDVHNFVCDNGKEEVGGVDIECYNRPLSPETLSLMCDEQDEVFFNKGSANRVACNNSQSIVQKPSTSDEYPDVYGEKERVVLTKFWDVLRGLITVGSIKETMCSSLAKKEDGSKEEPATNGNSNGAETDIGSEKKETPSNCVAKCPMPSPAIEISQKKLAMINGSGDLDLSLRVTCQFDGRG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc267g00007 447 PANTHER TESMIN/TSO1-RELATED 2 358 IPR028307 -
Stsc267g00007 447 ProSiteProfiles CRC domain profile. 1 102 IPR005172 -
Stsc267g00007 447 MobiDBLite consensus disorder prediction 35 54 - -
Stsc267g00007 447 MobiDBLite consensus disorder prediction 166 187 - -
Stsc267g00007 447 SMART CXC_2 62 103 IPR033467 -
Stsc267g00007 447 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 65 99 IPR005172 -
Stsc267g00007 447 MobiDBLite consensus disorder prediction 371 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc267g00007 Stsc-Chr267 48254 51437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc267g00007 2 373 CPP Transcription Factor Family AT4G29000 48.214 1.16e-104 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc267g00007 TCR 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc267g00007 - K21776 gmx:100811459 566.229