Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2678g00001 ATGGGGTTGAAATTTGCAAAGCAGGGACCACAAAAAGTTGATGACCTGACTTTACAGAATCACATGATCAATTACCTTACCAGGAATTTTATTCGAAACTTGGTATCCAAGCAACGGAGGCGGATGCTCATCGCCGGCTATGATCTCGACATGACTTATATCACAGACAGAATATTAGCAATGTCATTTCCTGCAGAACGAATGCGCGCAGTGTATCGAAATCCTCTATGGCAGGTCAAATCTGTGTTGGACATGACACACCATGAACATTATAAGATCTATAATCTCTGTATAGAAGAAAGTTATGATCCGGCAAACTTTCATGGACGTGTCGAAGCATACCCTTTCGACGATAACCATGTACCTCCCCTTGAAATGATCAAAGATTTTTGTGAAAGTGTTCATTCATGGCTATCAAGTGATCCGAAAAATATTGCTGTTATTCATTGCATGGCAGGGAAAGGTAGAACTGGCTTAATGGTGTGTTCATACCTAACTTATTCTGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGAGAGAAGGACAACAAATAATGAAGGAGTATCAATACCAAGCCAACGCCGTTATGTAAGGTACTTCGAAAGTTTACTTTCTAGCCCTAGGGGCAAAGTGAGCTTGCCTCCACCATGTAGCAGAGAATTGCGCCGAATTCGCCTTTATGATACAGTTAACATATATGCAATATTCTTTGTGATTTCAGAGCTGCAGGAGGAGGTTCCTAACCAGTGCTATCGCCCGCCGGTGGAGATTTTCCGAGGCTGCTGCCGAGAGATCAAGAAAGGCTATCAGAGAACAAACAGTCCTCGCTACTATCTTTCTTATATCGGCGAAGAAGAAAACGAAGATGGAAAGCAATCAGAACAAGAAGAACCTCGGATCGTTGTTCAAATGGACACAGAGAGTCCTGTAATATACAAAAAAACCTGTTTGGATTATTATTTCGACCAACCGATCCTGTTAACTGGAGATGTACGTGTGATATTCTATGAGAAATTGATAGGAGGCCGTCTCTTCTACTGCTGTTTTAATACATGTTTTGTTAAGAACAGCATATTACAGCTGGGAATAGAGGAATTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGAACTGATTTTAGCTTGGAATTACTGTTTGGCCCTGCCAATTCATCAAGTGTATCCACTAGTGACAATGCTAGTGATATTTCATTGTGA 1227 0.4124 MGLKFAKQGPQKVDDLTLQNHMINYLTRNFIRNLVSKQRRRMLIAGYDLDMTYITDRILAMSFPAERMRAVYRNPLWQVKSVLDMTHHEHYKIYNLCIEESYDPANFHGRVEAYPFDDNHVPPLEMIKDFCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLTYSGMSADEALQLYAERRTTNNEGVSIPSQRRYVRYFESLLSSPRGKVSLPPPCSRELRRIRLYDTVNIYAIFFVISELQEEVPNQCYRPPVEIFRGCCREIKKGYQRTNSPRYYLSYIGEEENEDGKQSEQEEPRIVVQMDTESPVIYKKTCLDYYFDQPILLTGDVRVIFYEKLIGGRLFYCCFNTCFVKNSILQLGIEELDKVGKKGRSICGTDFSLELLFGPANSSSVSTSDNASDISL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2678g00001 408 SMART PTEN_C2_2 216 391 IPR014020 -
Stsc2678g00001 408 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 27 402 - -
Stsc2678g00001 408 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 280 391 IPR035892 -
Stsc2678g00001 408 CDD PTP_PTEN 50 205 IPR045101 GO:0016791
Stsc2678g00001 408 ProSiteProfiles C2 tensin-type domain profile. 235 392 IPR014020 -
Stsc2678g00001 408 Gene3D - 279 394 - -
Stsc2678g00001 408 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 27 209 - -
Stsc2678g00001 408 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 207 IPR029021 -
Stsc2678g00001 408 ProSiteProfiles Phosphatase tensin-type domain profile. 40 209 IPR029023 -
Stsc2678g00001 408 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Stsc2678g00001 408 Gene3D Protein tyrosine phosphatase superfamily 26 210 IPR029021 -
Stsc2678g00001 408 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 183 IPR000387 GO:0016311|GO:0016791
Stsc2678g00001 408 Pfam C2 domain of PTEN tumour-suppressor protein 315 389 IPR014020 -
Stsc2678g00001 408 Pfam Tyrosine phosphatase family 142 185 IPR026893 GO:0004721
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2678g00001 Stsc-Chr2678 1599 3697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2678g00001 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.667 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2678g00001 K01110 - gmx:100809938 660.218