Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc266g00006 ATGGAAGCTTGCAGGAAGAGAAGGCGCTGCCCAAAGATCTTCAGCTTCCACTCCTTCGGCGATTCCGGCTGCCCCACCGCTCCCTCCGCCGCATTCCGCGACAACGTCAGATCCTTCCTCCGAGACTGCGCCGAGCTTGAAGACTACGTTCTTCAGAATAACCCTCTCTGGTGCACGCTTTTGGTCAGCGACAAGACCAATCTCACGGCGCCTCTCTTCACTCTCGAAGAACAGGTTTCCCAATCTTCCCACCCCTTCTGCGACCATTGCCGCTCTGCAGGTTGGAGTGGTCACTTTGTGTCAAAGAGAAGGTATCATTTCATAATACCAATGGACAATGGGTGGAACAAACCCTTACCGGAGGATGCTATTGATAATCAGGGCCACCTCTTGCATGGTGTGATTCATTGCAATGGCTATGGCCATTTGGTCTGCATTAATGGCATTGAAGGCGGTTCCAAGGTTCTTAGTGGTAGAGAGATCATGGATCTTTGGGACAGGATCTGCACAAACCTTGGAGCAAGGAAAATTTCAGTGGAAGATGTTTCAAGGAAGCGATCCATGGATCTTCGCCTACTTCATGGTGTTGCATATGGCCACTCATGGTTCGGTAGGTGGGGCTACAAGTTTTGTCGCGGAAGCTTTGGAGTGACAGGCCAAACATACTATGAAGCAATTGAAGGTCTAGGTTCCTTAGAGCTTGATGAGATAATGAGAGATTTAAGCAAGACAAAGTTCCATAAAGAGATCAAACAAATCATTCGCAACTATAGAGACATGAGTGAAACTCAGATTACCACATTGAGAGATCTTCTAAGGTTCATGCTCACTGTCAAGTCTCGCGTCCCATTTTCCAAGATAACAGTAAACTATACAGCTCCTTCTTCTTCAGCTTTCAACTCAAGAAATTCAACCAAACAAGCCTTCTTAAGTAGATCAAATCTGGCAAAGGAGAAGTCCGCGAAGTACAAGAAGTTCAGCACTGCAGTGGCTAATATGGATAGCAGGTGGCCAACTAGGAGGCTAGAGTTTGCCGCACAGGTGATTGTTGATTCACTGAAAGAGCACAAGGCAATGAACTTGGGCTCAGATGGGATGACGCGGCAGGATGTGAGGGATGCATCTAGGCTTCATATTGGTGATACCGGCTTGCTCGATTATGTGCTGAAATCACTCAACAATGTGATCGTGGGAAACTATGTTGTTCGCCGCATGGTTAACCCCTCAACAAGGATCCTAGAATACACAATTCATGAGGTTGGCAATGGGTTTAAGTCCCAAGAAATTGTGGTTGAGCCTGAGGCAATGGCTCTTGTAGTCCCTCAAGATGAGTCATCTAGGAAGCCTGGTGGTGATGTTTATTCTGATGTGTTCTACCTATACAAAAATGTGCTATTGAGATACCCGAATTCAGAAACCGTGGACTTACAAATTCAGACAATCCTCGATAGCCGGCATTTTGTGAAGGAATGGGATTATATGGATGAGATGCAGCAGGTTTTGACATTCATCTGCCAGCTCAAACCGAATTTCGTTGATATTAAGGCTGATTTGAAGAGGCTCATAGTCACTGAGATCACCGAATTGAATGGTGCAAGTGATGATGAGGTGCTTTTTGGGTTAGTCCAATCTGGAGTGGAGCTTTCTGTGAGGGGCATTTCCATTGATTTGTGCACTCCATTGAAGTTCCAAGGTGAATCCGACAATTGGATGGTGAGGTGTGAGTGTGGGGCGCAAGATGACGATGGCGAGAGAATGGTGGCCTGTGACATATGTGAGGTCTGGCAGCACACAAGGTGTTGTGGCATTGATGATTCTGAGACAGTACCACCTTTGTTTGTGTGCTCCAGCTGCTGTGATTCACTTGCCCCTACGCAGGCTGAGTCACCCTTTGCCATGGATTGTGTTGATGATTTCCTTGTCTCACCAGAGCCTACCATGTTTCTGGAATATGAATGTGGTTACTGA 1968 0.4675 MEACRKRRRCPKIFSFHSFGDSGCPTAPSAAFRDNVRSFLRDCAELEDYVLQNNPLWCTLLVSDKTNLTAPLFTLEEQVSQSSHPFCDHCRSAGWSGHFVSKRRYHFIIPMDNGWNKPLPEDAIDNQGHLLHGVIHCNGYGHLVCINGIEGGSKVLSGREIMDLWDRICTNLGARKISVEDVSRKRSMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTGQTYYEAIEGLGSLELDEIMRDLSKTKFHKEIKQIIRNYRDMSETQITTLRDLLRFMLTVKSRVPFSKITVNYTAPSSSAFNSRNSTKQAFLSRSNLAKEKSAKYKKFSTAVANMDSRWPTRRLEFAAQVIVDSLKEHKAMNLGSDGMTRQDVRDASRLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHEVGNGFKSQEIVVEPEAMALVVPQDESSRKPGGDVYSDVFYLYKNVLLRYPNSETVDLQIQTILDSRHFVKEWDYMDEMQQVLTFICQLKPNFVDIKADLKRLIVTEITELNGASDDEVLFGLVQSGVELSVRGISIDLCTPLKFQGESDNWMVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCSSCCDSLAPTQAESPFAMDCVDDFLVSPEPTMFLEYECGY 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc266g00006 655 CDD PHD_MMD1_like 574 618 - -
Stsc266g00006 655 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 5 508 - -
Stsc266g00006 655 Pfam PHD-finger 573 619 IPR019787 -
Stsc266g00006 655 SUPERFAMILY FYVE/PHD zinc finger 565 622 IPR011011 -
Stsc266g00006 655 ProSitePatterns Zinc finger PHD-type signature. 574 618 IPR019786 -
Stsc266g00006 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 623 IPR013083 -
Stsc266g00006 655 SMART PHD_3 573 619 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc266g00006 Stsc-Chr266 37079 40228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc266g00006 5 624 PHD Transcription Factor Family AT5G22260 32.612 5.87e-120 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc266g00006 PHD 7.5e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc266g00006 K26271 - gmx:100813850 937.947