Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc266g00003 ATGGCTGTTCAAGATCAAAGTGGAGTTGCTAGATCACATGGTGGTCTCACAGTAGGAAATGAAGTATCTTTTGTTTCTGGAGCACATTCAGTTTCACATGTTCGATTGAATGATCAATTTTCTTGCGGAAATGACTATTCCCCCAAGGTGAGGAAACCATATACAATTACAAAGCAGCGAGAGCGATGGACAGATGATGAACACAAGAAGTTCCTTGAGGCTTTGAAGCTCTATGGTCGAGCTTGGCGACGGATCGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTGTTCGCGACTTGAGTGGGAATCCTACAAGCCTAGTGGAGCCAATTGAGATTCCACCTCCTCGACCAAAGCGAAAGCCGATGCATCCTTACCCAAGGAAGCTAGTAGAGATTCCCAATAGGGAAATCTCTATCATGGATCATTCAGGGAGATCTACTTCTCCCAAGTCAGCAGATTTTGATCAAGAAAACAAATCTCCCAAGTCAGTATTATCTGCTGTTGTTTCTGAGACCCTTGGTTCCTCGGATTCAGATACACGGGCTGGAAGTTTATCCCCAGTGTCATCCATGAGTGGCCTTCATACCTGTAATTCTGCACTTGCTGAGCCCAAATCATCATTTGAGGAAGATAAGTCCACACCAATAGTTGGATCAAATGCCAATGCTGCTCAAGATGAGCACCCTCTTGTGAAACTCGAGCTTTCCCACAACGAAAGTGTTTCTACCAAAGATGATGTGGCTGAAGAATCATCAGGTCGCACACTCAAACTTTTCGGAACAACCCTATTGTTAACAGATACCTCTTCTCCAACCAGTGAGGTATCCAAACCTGTACCTATCAGTACCATGCATCTTATGCAATTTCAGAGTAGAAATTCAGGTGCTACAAAAGATCCTGCAACCATTGTTGCACCTTGGTGGATTCTTTCACACAATAGACCATTCATACCACTGCACAAAGAGAGTGAGGGTAAGAATCTAGATTCTGATCTTGGGGAATTTGAAAGCAAAGAAGTTCAAAAGGAACCGTCATGGACCGGTTCGAACACCAGTTCGGTTAGTGATGAAGAGAACACTGCAAAAAGTAAGGAGCAAGCCACGAGTTGCATAAGGGTGAGGCCTAGAACTTGTGGGAAAGGGTTTGTGCCATATAAGAGGTGCATGGCAGATAGAGAAAAGAACCATTACTACTCAACAGTAACATGTGAGAAGAGGGAAGAACAAAGGATCAAGCTTTCCTTATAA 1287 0.4359 MAVQDQSGVARSHGGLTVGNEVSFVSGAHSVSHVRLNDQFSCGNDYSPKVRKPYTITKQRERWTDDEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVVRDLSGNPTSLVEPIEIPPPRPKRKPMHPYPRKLVEIPNREISIMDHSGRSTSPKSADFDQENKSPKSVLSAVVSETLGSSDSDTRAGSLSPVSSMSGLHTCNSALAEPKSSFEEDKSTPIVGSNANAAQDEHPLVKLELSHNESVSTKDDVAEESSGRTLKLFGTTLLLTDTSSPTSEVSKPVPISTMHLMQFQSRNSGATKDPATIVAPWWILSHNRPFIPLHKESEGKNLDSDLGEFESKEVQKEPSWTGSNTSSVSDEENTAKSKEQATSCIRVRPRTCGKGFVPYKRCMADREKNHYYSTVTCEKREEQRIKLSL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc266g00003 428 PANTHER SWI/SNF COMPLEX-RELATED 43 364 - -
Stsc266g00003 428 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Stsc266g00003 428 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Stsc266g00003 428 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Stsc266g00003 428 MobiDBLite consensus disorder prediction 126 143 - -
Stsc266g00003 428 SMART sant 59 107 IPR001005 -
Stsc266g00003 428 Gene3D - 62 109 - -
Stsc266g00003 428 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Stsc266g00003 428 MobiDBLite consensus disorder prediction 348 381 - -
Stsc266g00003 428 MobiDBLite consensus disorder prediction 216 235 - -
Stsc266g00003 428 MobiDBLite consensus disorder prediction 120 205 - -
Stsc266g00003 428 MobiDBLite consensus disorder prediction 355 370 - -
Stsc266g00003 428 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Stsc266g00003 428 CDD SANT 62 105 IPR001005 -
Stsc266g00003 428 MobiDBLite consensus disorder prediction 153 205 - -
Stsc266g00003 428 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Stsc266g00003 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc266g00003 Stsc-Chr266 6176 9388 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc266g00003 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc266g00003 - - gmx:778060 517.309