Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc263g00003 ATGACTCAGTTGTTGCTAGCTGTGGACTACCTTCACTCTAACCGGGTACTCCACAGAGATCTTAAGTGTTCCAACATACTTCTCACGAGAGACAATAACATTCGGCTAGGTGACTTTGGTCTTGCAAAGCTACTCAATACAGAAGACCTTCCTTCCCCGGTTATTGGAACTCCAAACTACATGTGTCCTGAGCTCTTTGATAACACGCCTTACGGTTATAAATCCGATATATGGGCCCTCGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCAGCATTTCGTGCTCCGGACAGGGCAGGATTAATCAACAAAATAAATAGATCCTCCATTTCTCCACTTCCAATTGGTTACTCTCCCACGCTGAAACAACTTATCAAAAGCATGCTGAGGAGAAATCCGGAACATAGACCTACAGCAGCCGAGTTATTAAGGCATCCTCATTTGCAACCTTACGTTCTTCGCAGTCGCATTGCTTCGCCCGTTTTTCTTCCGGTGCATCTCATAAATAGTAGCCCAAAGGATAAAACAAAGCAATCTCCCAAAAAATCTAGTGGTGGCAGAGATCATAGAGAAAAACAAGAAGGATTAGTAAATCGTATGGAGCGAGTTCATCTCATTGAGGGAAATGCAGAGGTACATGTGACTAATCATGACAATGATGGCAAGTTAACAGTCTCAACAAGCGCCGAAGACAACCTTGAGACCAAGATGGTTGATCCTACCAGCTTCACAATGGAAAATTCAGCCAGTATTAGTGGCTCGAAAGATGAGTCGATTACATCTGATTCAGCCATTTGCAGTGTGTGCAAGGAAGCAGACTTTAAAGGTAGACTTGCGAAGGAAGCAACTGAAAATGAGATCACATCAAAGAGTACACTAGATTCCGTGCATGAGAAACAAGGATTTGCTACTGAAAATTTTCTCCAGTCAGATTCAAATAATATAACTGCAGCAGCCACAGAGAACGAACACACTCTTTCCAATGGAGGTTTGGATAAAACTGGTCCGTTGACGGACGTTGCCAAACCGGTGGACTCCTGTAAATCAGTAATGTCTAGTCAAGACAGTACCATCGGCAATGATAAAGATGACTTCGTCGATGAAGAAAGATCATCCCCTGTTTTGCAGCCCGGCGGTCTTGAGAAAGACACCGAATCCGATAGCAGCTTAAAGAAAAGTGGAAACCATGATGCATTACATTTGGACTGCTTGTCATCTGCAAGTAACGAAACACTTCCCGGCGTTGCAACCACAGCTGCACATAAAGAAGGTGATAACACTGCAGCAGTTGTCGATAAAACGCCAAATGGCATTTCATTAAGCAGACCTACTTCGAATGGCAGCAACGGAACAACAAAGAGTGTGTTGCTTAATAGATCCCAGAACAGAGCTGATGCTCTGGAAGCTTTGCTTGAGTTATGTGCTCAGCTGCTTAAACAAGGGAAGCTTGATGAACTGGCTGCTGTGTTAAGACCATTTGGAGAAGACACTGTCTCATCAAGAGAAACAGCAATATGGCTCACAAAGAGTCTTCTCTCATCACAGAAATTTAATCCAGAAACCTAA 1569 0.4347 MTQLLLAVDYLHSNRVLHRDLKCSNILLTRDNNIRLGDFGLAKLLNTEDLPSPVIGTPNYMCPELFDNTPYGYKSDIWALGCCMFEIVAHQPAFRAPDRAGLINKINRSSISPLPIGYSPTLKQLIKSMLRRNPEHRPTAAELLRHPHLQPYVLRSRIASPVFLPVHLINSSPKDKTKQSPKKSSGGRDHREKQEGLVNRMERVHLIEGNAEVHVTNHDNDGKLTVSTSAEDNLETKMVDPTSFTMENSASISGSKDESITSDSAICSVCKEADFKGRLAKEATENEITSKSTLDSVHEKQGFATENFLQSDSNNITAAATENEHTLSNGGLDKTGPLTDVAKPVDSCKSVMSSQDSTIGNDKDDFVDEERSSPVLQPGGLEKDTESDSSLKKSGNHDALHLDCLSSASNETLPGVATTAAHKEGDNTAAVVDKTPNGISLSRPTSNGSNGTTKSVLLNRSQNRADALEALLELCAQLLKQGKLDELAAVLRPFGEDTVSSRETAIWLTKSLLSSQKFNPET 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc263g00003 522 MobiDBLite consensus disorder prediction 433 455 - -
Stsc263g00003 522 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 2 465 - -
Stsc263g00003 522 MobiDBLite consensus disorder prediction 169 195 - -
Stsc263g00003 522 SMART serkin_6 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc263g00003 522 ProSiteProfiles Protein kinase domain profile. 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc263g00003 522 MobiDBLite consensus disorder prediction 420 455 - -
Stsc263g00003 522 Gene3D Transferase(Phosphotransferase) domain 1 1 216 - -
Stsc263g00003 522 SUPERFAMILY Protein kinase-like (PK-like) 1 182 IPR011009 -
Stsc263g00003 522 MobiDBLite consensus disorder prediction 176 195 - -
Stsc263g00003 522 MobiDBLite consensus disorder prediction 349 395 - -
Stsc263g00003 522 Pfam Protein kinase domain 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc263g00003 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc263g00003 Stsc-Chr263 30525 33240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc263g00003 3 150 MAP Kinase Kinase Kinase AT4G08500 38.411 5.45e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc263g00003 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc263g00003 K08857 - gmx:100793379 607.446