Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc263g00002 ATGGAGAGTGTCAAGATGGGAGACTATGAAGTGATACAGCAGCTTGGAAGAGGAACATTGGGTCCCACTTTTCTTGTTCTCCACAAAACTCAGAATCAAAGGTGTGTGCTCAAGAAGATTCGGTTGTCCAAGCAAACAGATAAGTCACAGCTATCATCAGCACCCCAGGAGATGAACCTGATTGCAAAACTAAGTAGCCCTTATATTGTGGAGTGCAAAGATGCTTGGGTAGAGAAGGGGGACTACGTATACATTATATCTGCTTATTGCGAAGGAGGTGACATGGCTCAGTATATAAAGAAAGCTCGAGGATCGTTCTTCCCTGAGGAGAGAGTTTGCAAATGGATGACTCAGTTGTTGCTAGCTGTGGACTACCTTCACTCTAACCGGGTACTCCACAGAGATCTTAAGTGTTCCAACATACTTCTCACGAGAGACAATAACATTCGGCTAGGTGACTTTGGTCTTGCAAAGCTACTCAATACAGAAGACCTTCCTTCCCCGGTTATTGGAACTCCAAACTACATGTGTCCTGAGCTCTTTGATAACACGCCTTACGGTTATAAATCCGATATATGGGCCCTCGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCAGCATTTCGTGCTCCGGACAGGGCAGGATTAATCAACAAAATAAATAGATCCTCCATTTCTCCACTTCCAATTGGTTACTCTCCCACGCTGAAACAACTTATCAAAAGCATGCTGAGGAGAAATCCGGAACATAGACCTACAGCAGCCGAGTTATTAAGGCATCCTCATTTGCAACCTTACGTTCTTCGCAGTCGCATTGCTTCGCCCGTTTTTCTTCCGGTGCATCTCATAAATAGTAGCCCAAAGGATAAAACAAAGCAATCTCCCAAAAAATCTAGTGGTGGCAGAGATCATAGAGAAAAACAAGAAGGATTAGTAAATCGTATGGAGCGAGTTCATCTCATTGAGGGAAATGCAGAGGTACATGTGACTAATCATGACAATGATGGCAAGTTAACAGTCTCAACAAGCGCCGAAGACAACCTTGAGACCAAGATGGTTGATCCTACCAGCTTCACAATGGAAAATTCAGCCAGTATTAGTGGCTCGAAAGATGAGTCGATTACATCTGATTCAGCCATTTGCAGTGTGTGCAAGGAAGCAGACTTTAAAGGTAGACTTGCGAAGGAAGCAACTGAAAATGAGATCACATCAAAGAGTACACTAGATTCCGTGCATGAGAAACAAGGATTTGCTACTGAAAATTTTCTCCAGTCAGATTCAAATAATATAACTGCAGCAGCCACAGAGAACGAACACACTCTTTCCAATGGAGGTTTGGATAAAACTGGTCCGTTGACGGACGTTGCCAAACCGGTGGACTCCTGTAAATCAGTAATGTCTAGTCAAGACAGTACCATCGGCAATGATAAAGATGACTTCGTCGATGAAGAAAGATCATCCCCTGTTTTGCAGCCCGGCGGTCTTGAGAAAGACACCGAATCCGATAGCAGCTTAAAGAAAAGTGGAAACCATGATGCATTACATTTGGACTGCTTGTCATCTGCAAGTAACGAAACACTTCCCGGCGTTGCAACCACAGCTGCACATAAAGAAGGTGATAACACTGCAGCAGTTGTCGATAAAACGCCAAATGGCATTTCATTAAGCAGACCTACTTCGAATGGCAGCAACGGAACAACAAAGAGTGTGTTGCTTAATAGATCCCAGAACAGAGCTGATGCTCTGGAAGCTTTGCTTGAGTTATGTGCTCAGCTGCTTAAACAAGGGAAGCTTGATGAACTGGCTGCTGTGTTAAGACCATTTGGAGAAGACACTGTCTCATCAAGAGAAACAGCAATATGGCTCACAAAGAGTCTTCTCTCATCACAGAAATTTAATCCAGAAACCTAA 1914 0.4363 MESVKMGDYEVIQQLGRGTLGPTFLVLHKTQNQRCVLKKIRLSKQTDKSQLSSAPQEMNLIAKLSSPYIVECKDAWVEKGDYVYIISAYCEGGDMAQYIKKARGSFFPEERVCKWMTQLLLAVDYLHSNRVLHRDLKCSNILLTRDNNIRLGDFGLAKLLNTEDLPSPVIGTPNYMCPELFDNTPYGYKSDIWALGCCMFEIVAHQPAFRAPDRAGLINKINRSSISPLPIGYSPTLKQLIKSMLRRNPEHRPTAAELLRHPHLQPYVLRSRIASPVFLPVHLINSSPKDKTKQSPKKSSGGRDHREKQEGLVNRMERVHLIEGNAEVHVTNHDNDGKLTVSTSAEDNLETKMVDPTSFTMENSASISGSKDESITSDSAICSVCKEADFKGRLAKEATENEITSKSTLDSVHEKQGFATENFLQSDSNNITAAATENEHTLSNGGLDKTGPLTDVAKPVDSCKSVMSSQDSTIGNDKDDFVDEERSSPVLQPGGLEKDTESDSSLKKSGNHDALHLDCLSSASNETLPGVATTAAHKEGDNTAAVVDKTPNGISLSRPTSNGSNGTTKSVLLNRSQNRADALEALLELCAQLLKQGKLDELAAVLRPFGEDTVSSRETAIWLTKSLLSSQKFNPET 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc263g00002 637 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Stsc263g00002 637 MobiDBLite consensus disorder prediction 548 570 - -
Stsc263g00002 637 MobiDBLite consensus disorder prediction 284 310 - -
Stsc263g00002 637 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc263g00002 637 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc263g00002 637 MobiDBLite consensus disorder prediction 464 510 - -
Stsc263g00002 637 SUPERFAMILY Protein kinase-like (PK-like) 6 297 IPR011009 -
Stsc263g00002 637 MobiDBLite consensus disorder prediction 535 570 - -
Stsc263g00002 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Stsc263g00002 637 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 6 580 - -
Stsc263g00002 637 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc263g00002 637 MobiDBLite consensus disorder prediction 291 310 - -
Stsc263g00002 637 CDD STKc_Nek 8 264 - -
Stsc263g00002 637 Gene3D Transferase(Phosphotransferase) domain 1 92 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc263g00002 Stsc-Chr263 26670 33240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc263g00002 15 265 MAP Kinase Kinase Kinase AT1G53570 33.594 9.07e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc263g00002 Pkinase 7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc263g00002 K08857 - gmx:100793379 764.222