Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc25g00034 ATGGCATTCCTTCCACAACCACGTGAATCAGCAGAACCCGAAGATTCCGAAGAAACGATCGTCACAAGCGTAGCAGCTTCAGCTAGAGCAATAGCAGCAGCAGAAGAAGATAACGGAACCATCGACGTTCACACAACAAGAGGCGCAACCATAAGGTACCTTCCATTGGATCATCTCTACTCTGCCACGTCACCCTGCAGTGGCTCCTCCAACGTCATGTCCAAGAAAGTTAAGGCTCGCAAGCTCACACCGCATTTTCACCAAAACGACGACGTTAGCGCCAAAACGAACAGCAACAACAACAACAACAATGATGGTGGTGGTGATGCTGAGAATGTTTCTACTGCTAGTTCTGTTATTATTCCGCCGAATAATTTTGACAGCAATGATGATAAGCCACCGCTTGTTTTTGTTTACTCTCGGCGGAGGAAGAGGGGTGGTTCTTGTTCCACTGCTACGTCGTTTTACGATTCGGTTTCGGGTCGGGTTGGAAGGGACCCAGCGGAGAGGGCGGCTTCGAAAAAGAGGAAGATTGGGACCACCGAGCTGGAGAAATTGGGAGTGGATTTGGGCGCTTTGGGGGTGCTTGACGACGGACCTAGGTTGAGAGAATGCCGCATTGGTAATAACGATGGTGGTGGTGGTGATGGTGTTGGTTCAGGGGAGAAGTTGGTATCAGAATCTCGAACAGTGAAGAGATGGGTCGGGTTGAATTTTGATAATGCTGACCCTGAGGCGTTCATTGGGTTACGATGCAAGGTATTTTGGCCAATGGATATAAAGTGGTATGCTGGCCACGTCCAAGGTTATGACATGGAAACTAAGATACACCATGTTAAATATGACGACGGCGAGGAAGAAAATTTAGTTCTTTCGAATGAAAATGTGAAATTTCATATCTCCCGCCAGGAGATGAAGCGTTTGAATTTGAGTTATGGAAAAGCTCGTGACAGTAATGTCTCTGATTGTGACGTTGAAGAGATGCTTGCGATGGCTGCAAGTTTGAATGATTGTCAACAATTTGAACCTGGAGACATTGTATGGGCTAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCGCGCAAGTGCAAGGGTTTGAAGACGACATTGGGAGGAAAATCAGTTCCTGTCCAGTTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAGCAGGTGAAATCATTCCTAAGTGGACTTCTTACCGAGCTATACACAAAGTGCAACAAAACTAGTTTTGTTGACAGTATAGAAGAGGCAAAGAGGTATTTAAATGAACAGAAGCTTCCCTCAGAGATGCTAGAGTTGCAAAAAGGATGTACAGCTGATGACTGTAAAAATGTAAATGGAGAGGATGGAAGATGTACAGATTCAGGAGAAGATTCTTTGAGTGACAAAGAACCTTCAACAGCATTGGAAAATATTGAATTTCCCTTGGAAGTAGGAGACCTACAAATTATAAGCCTTGGGAAATTAGTTGAAGATTCTTCTTCTTTTCGTGATGGAAGATCCATCTGGCCTGAAGGGTACACTGCTGTGAGGAAGTTTACTTCAGTCACTGATGCTAAAGTTTCTGCTGCTTATAAAATGGAGGTCCTGAGGGATCCAGAATCCAAAAGACGACCTCTATTTAGAGTGACAGTTGATGGTGGTGAGAAGTTCAATGATTATACACCATCAGCCTGCTGGAATCAAATATACAAAAGGATAAGTGAAATAGAAAAGGATGGTTCTGAAGCTACTGTTGCAGAAGGTAGGGTAGAAAGCGGATATGAATCTGGGACTGATATGTTTGGTTTCTCCAATCCTGAAGTGGCTAAACTAATAAAGGGATTATCCAAATCCAAAGTTTCTTCAAAGAACTCAAGTCGGAAGTTAGGTCCCAGAAGATGTAATGACCTTCCTGTTGGTTATAGGCCGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTCTGCCATATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGGATGATGGTGCATGCTAGATGCTATGGTGAACTGGAATCTGTTAATGGAGTGCTATGGTTGTGCAACTTATGTCAATCGGGTGATCCTCCACCACCTTGTTGCTTATGCCCACTAATAGGAGGAGCAATGAAGCCTACAACAGATGGCCGATGGGCACATTTGGCTTGTGCTATGTGGATACCTGAGACTTGCTTAGCTGATGTCAAAAGGATGGAACCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGTAGCATATGTGGTGTATCTTATGGCGCTTGCATCCAATGTTCAAACAATTCTTGCCGAGTAGCATATCATCCACTTTGTGCTCGTGCTGCTGGTCTTTGTGTCGAGCTTGAGAACGAGGACAGGCTTTACCTACTTTCTGTTGATGATGATGAAGATCAGTGCATTCGACTGCTTTCTTTCTGCAAGAAACATAGGCAGCCATCTAATGAACATTCTGTTGCCAATGAACGTATTGTTCGAGCTGCAGGTCCATGTTCTGACTATGAACCACCACTCAACCCGTCTGGTTGTGCTCGAAGTGAGCCATATGATTATTTTGGCAGGAGAGGACGGAAAGAACCTGAAGTACTTGCAGCTGCATCTTCAAAACGCTTGTTTGTTGAGAACCAACCATACTTAGTAGGTGGATACTGCCAACATGGGTTGTCTACTGACCCAGAACCTTCTGGCAGAGGAGTCTGCCCTCAAATACATAGGCTGAGGACCTCTTTGGGTGATGATTCGGATGACATACTTTCTATTTCAGAGAAATATAAGTACATGAGGAAAACTTTTCGCAAACGGCTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATATTTGCAAAGCATCCGTACAAAGGTGGAGACATGGTGATTGAGTACACTGGTGAACTTGTTAGGCCTTCCATAGCTGACCGCAGAGAGCGCTTTATATACAATTCTTTGGTGGGTGCTGGAACATACATGTTCCGGATTAATGATGAACGAGTCATTGATGCCACTAGAGCGGGAAGTATAGCTCATTTAATCAATCATTCTTGTGCACCGAATTGCTATTCACGAGTTATTAATGTTAATGATTTTTCTCAATTGATGAGCGGCTTTCTTGTTACTGTGGTTTCCCAAAATGTCGAGGTATAG 3210 0.4399 MAFLPQPRESAEPEDSEETIVTSVAASARAIAAAEEDNGTIDVHTTRGATIRYLPLDHLYSATSPCSGSSNVMSKKVKARKLTPHFHQNDDVSAKTNSNNNNNNDGGGDAENVSTASSVIIPPNNFDSNDDKPPLVFVYSRRRKRGGSCSTATSFYDSVSGRVGRDPAERAASKKRKIGTTELEKLGVDLGALGVLDDGPRLRECRIGNNDGGGGDGVGSGEKLVSESRTVKRWVGLNFDNADPEAFIGLRCKVFWPMDIKWYAGHVQGYDMETKIHHVKYDDGEEENLVLSNENVKFHISRQEMKRLNLSYGKARDSNVSDCDVEEMLAMAASLNDCQQFEPGDIVWAKLTGHAMWPAVVLDESLARKCKGLKTTLGGKSVPVQFFGTHDFARVRLQQVKSFLSGLLTELYTKCNKTSFVDSIEEAKRYLNEQKLPSEMLELQKGCTADDCKNVNGEDGRCTDSGEDSLSDKEPSTALENIEFPLEVGDLQIISLGKLVEDSSSFRDGRSIWPEGYTAVRKFTSVTDAKVSAAYKMEVLRDPESKRRPLFRVTVDGGEKFNDYTPSACWNQIYKRISEIEKDGSEATVAEGRVESGYESGTDMFGFSNPEVAKLIKGLSKSKVSSKNSSRKLGPRRCNDLPVGYRPVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELESVNGVLWLCNLCQSGDPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVANERIVRAAGPCSDYEPPLNPSGCARSEPYDYFGRRGRKEPEVLAAASSKRLFVENQPYLVGGYCQHGLSTDPEPSGRGVCPQIHRLRTSLGDDSDDILSISEKYKYMRKTFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRRERFIYNSLVGAGTYMFRINDERVIDATRAGSIAHLINHSCAPNCYSRVINVNDFSQLMSGFLVTVVSQNVEV 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc25g00034 1069 SMART set_7 955 1068 IPR001214 GO:0005515
Stsc25g00034 1069 ProSiteProfiles Extended PHD (ePHD) domain profile. 709 833 IPR034732 -
Stsc25g00034 1069 SMART PHD_3 767 833 IPR001965 -
Stsc25g00034 1069 SMART PHD_3 657 704 IPR001965 -
Stsc25g00034 1069 Pfam PWWP domain 344 431 IPR000313 -
Stsc25g00034 1069 Gene3D - 330 441 - -
Stsc25g00034 1069 MobiDBLite consensus disorder prediction 457 474 - -
Stsc25g00034 1069 ProSitePatterns Zinc finger PHD-type signature. 658 703 IPR019786 -
Stsc25g00034 1069 SMART PWWP_4 341 404 IPR000313 -
Stsc25g00034 1069 CDD PWWP_AtATX1-like 342 437 - -
Stsc25g00034 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 835 IPR013083 -
Stsc25g00034 1069 SUPERFAMILY Tudor/PWWP/MBT 337 438 - -
Stsc25g00034 1069 ProSiteProfiles SET domain profile. 955 1069 IPR001214 GO:0005515
Stsc25g00034 1069 MobiDBLite consensus disorder prediction 457 476 - -
Stsc25g00034 1069 MobiDBLite consensus disorder prediction 85 114 - -
Stsc25g00034 1069 Gene3D SET domain 926 1062 IPR046341 -
Stsc25g00034 1069 CDD Tudor_Agenet_AtEML-like 248 298 - -
Stsc25g00034 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 702 IPR013083 -
Stsc25g00034 1069 Pfam SET domain 966 1051 IPR001214 GO:0005515
Stsc25g00034 1069 PANTHER PHD FINGER PROTEINS 60 1054 - -
Stsc25g00034 1069 Pfam F/Y rich C-terminus 548 622 IPR003889 GO:0005634
Stsc25g00034 1069 Pfam PHD-finger 670 703 - -
Stsc25g00034 1069 ProSiteProfiles Zinc finger PHD-type profile. 655 706 IPR019787 -
Stsc25g00034 1069 SUPERFAMILY FYVE/PHD zinc finger 649 719 IPR011011 -
Stsc25g00034 1069 ProSiteProfiles FYR domain FYRC motif profile. 546 632 IPR003889 GO:0005634
Stsc25g00034 1069 Pfam F/Y-rich N-terminus 489 539 IPR003888 GO:0005634
Stsc25g00034 1069 Gene3D - 484 624 - -
Stsc25g00034 1069 SUPERFAMILY Tudor/PWWP/MBT 246 290 - -
Stsc25g00034 1069 MobiDBLite consensus disorder prediction 1 21 - -
Stsc25g00034 1069 CDD ePHD_ATX1_2_like 718 832 IPR041956 -
Stsc25g00034 1069 ProSiteProfiles PWWP domain profile. 343 406 IPR000313 -
Stsc25g00034 1069 MobiDBLite consensus disorder prediction 89 114 - -
Stsc25g00034 1069 SMART fyrc_3 550 639 IPR003889 GO:0005634
Stsc25g00034 1069 Gene3D - 247 297 - -
Stsc25g00034 1069 SMART fyrn_3 498 542 IPR003888 GO:0005634
Stsc25g00034 1069 ProSiteProfiles FYR domain FYRN motif profile. 483 542 IPR003888 GO:0005634
Stsc25g00034 1069 SUPERFAMILY SET domain 943 1051 IPR046341 -
Stsc25g00034 1069 CDD PHD_ATX1_2_like 657 703 IPR042010 -
Stsc25g00034 1069 FunFam Histone-lysine N-methyltransferase 707 835 - -
Stsc25g00034 1069 Pfam PHD-zinc-finger like domain 711 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc25g00034 Stsc-Chr25 191842 200666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc25g00034 658 803 C2H2 Transcription Factor Family AT3G14740 39.735 2.74e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc25g00034 zf-HC5HC2H_2 3e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc25g00034 - - gmx:100808923 1521.14