Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc25g00026 ATGACTCAGGCTGTGGAGGTTCTAAACAGGTATGGAACGGATCTGGTTGGTGAAGCCAGGGGTTCTGATTCTGAGTGTTTGACGGGTTTTGAATGTTTCTTGAACATTGTGAGGGCACTGGGGATGGGATCATGCATCTCAGAGGCTGGCGGTCGCTCTCCTCCCCTTCTTCCATTTCAGCCTGACACCAACATGGATGGTGGGAAGAGGAGGAGGTTGAAGGGTTCCCCTTCCTTTGATTCCAAAATTCCTGGGAGGATGCACCTGAATGGGTCCAGCGAAGTTGCATCATTGTACTGCAAGCAAGGTAAAAAAGGGATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTTGTTCAAAGGAGGATACCATTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCATAGGGTTGCAAGGAAAGTCAGGGACTCTTTCCCTTTAAAGCTTAGTGCTCAACTGGATTTCCACTATATGAGTACAGATGGGCTGAGTGATCAGGGCAGTGCCGCAGGAAGTTACAAATCTGAAGAGATTGGAATTAGACTGGTTGACGAGAAACCTAGAGTGACTGATCATGAGCTTGATGGAACGGATACTATTTTGACACTAAAAGAATCCTTTTTGAAGGCTTGTAAGATTATGGATAAGGAACTGAAACTGCATCCTGATATTGATTGCTTTTGCAGCGGGACTACGGCTGTTACCTTGGTCAAGCAGGGCAAGGATCTTGTTATTGGAAATGTTGGGGACTCTAGAGCTATATTGGGTACCCGAGATCATGATGATAATCTTGTTGCTGTTCAATTGACAATTGACCTCAAGCCAAATCTTCCAAGGGAAGAAGAGCGAATTAAGCTTCGTAAAGGAAGGGTCTTTTCCCTTCAGAATGAACCAGATGTTTCTCGTGTTTGGCTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCAAGGGCTTTTGGAGATTTTTGCTTGAAGGACTTTGGATTGATTTCAGTTCCAGATGTGTCATATCATCGCCTTACTGAGAATGATGAATTTGTTGTATTAGCAACAGATGGGATATGGGATGTTTTATCAAATGAAGAGGTCGTGGAAATAGTGGGATCTGCTCCACGCCCTACTGCGGCTCGATCACTGGTGGAGTCAGCTGTTAAAGCATGGAGGATGAAGTTCCCTTTGTGCAAGGTTGATGATTGTGCTGCAGTTTGCCTCTTCCTTGATTCCGACTCAGGTTCAGCATCTACCGCAGATGACTTGACACTAGAGTCAACAATTGACCAATCTGAGCAGTCTACTCTCCTCGGCGAGAAGGGAAGTGGCATGGATGCTGAAAAACAGCAGCAATAG 1356 0.4543 MTQAVEVLNRYGTDLVGEARGSDSECLTGFECFLNIVRALGMGSCISEAGGRSPPLLPFQPDTNMDGGKRRRLKGSPSFDSKIPGRMHLNGSSEVASLYCKQGKKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHRVARKVRDSFPLKLSAQLDFHYMSTDGLSDQGSAAGSYKSEEIGIRLVDEKPRVTDHELDGTDTILTLKESFLKACKIMDKELKLHPDIDCFCSGTTAVTLVKQGKDLVIGNVGDSRAILGTRDHDDNLVAVQLTIDLKPNLPREEERIKLRKGRVFSLQNEPDVSRVWLPNSDFPGLAMARAFGDFCLKDFGLISVPDVSYHRLTENDEFVVLATDGIWDVLSNEEVVEIVGSAPRPTAARSLVESAVKAWRMKFPLCKVDDCAAVCLFLDSDSGSASTADDLTLESTIDQSEQSTLLGEKGSGMDAEKQQQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc25g00026 451 ProSiteProfiles PPM-type phosphatase domain profile. 95 409 IPR001932 -
Stsc25g00026 451 SUPERFAMILY PP2C-like 92 410 IPR036457 -
Stsc25g00026 451 SMART PP2C_4 84 407 IPR001932 -
Stsc25g00026 451 MobiDBLite consensus disorder prediction 415 451 - -
Stsc25g00026 451 PANTHER PROTEIN PHOSPHATASE 82 407 IPR015655 GO:0004722|GO:0006470
Stsc25g00026 451 MobiDBLite consensus disorder prediction 415 438 - -
Stsc25g00026 451 Pfam Protein phosphatase 2C 174 373 IPR001932 -
Stsc25g00026 451 Gene3D - 92 415 IPR036457 -
Stsc25g00026 451 MobiDBLite consensus disorder prediction 56 77 - -
Stsc25g00026 451 CDD PP2Cc 95 409 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc25g00026 Stsc-Chr25 140671 145001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc25g00026 68 451 PP2C-type Phosphatase Gene Family AT1G16220 55.416 5.95e-152 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc25g00026 - - gmx:100810538 760.755