Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc259g00004 ATGGGTGCTGAAGCTGGTGCAACCGAGTGTTTCAGTAAGGCTATGGCGTCGATGCCTGGGTTTCGGTTCCATCCCACGGATGAGGAGCTGGTTATGTACTATCTGAAGAGGAAGATATGTGGGAAGAGGCTGAAACTCGACGTGATTCTAGAAACCGATGTTTACAAGTGGGATCCTGAGGAATTGCCAGGGCTCTCTGTACTAAGGACTGGAGATAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAATGGTGCGAGGTCAAACCGAGCAACAAGGCAAGGGTACTGGAAAGCAACAGGAAAGGATCGTAATGTGACCTGCAATTCTCGGTCAGTTGGAGTGAAGAAGACTCTGGTTTTCTATAGAGGCAGAGCTCCTAATGGTGAGCGGACTGATTGGGTTATGCACGAATACACCATGGATGAAGAAGAGCTCAATAGGTGCCAGGGTATTAAGGACTATTTTGCACTTTACAAGCTATACAAGAAAAGTGGACCTGGTCCTAAAAATGGGGAACAGTATGGTGCACCATTTAAAGAAGAGGAGTGGGCTGATGATGAATGTGTAGATTTCAATATTAACTCAGCTGACCGGGAGTTGGCAAATACTGTTCCTGTTAATGATCAGCTGCGTCCTTTGGCTGATGATGAAGTCACTGACATGATTAATCAAATTTTGGATGATGAGCTTGCCCTTGACCAGCAATTTGGTGATAGCCTTCTTGAATTTCCTCAGGTTGTTTCTGAAGAAACACGAAGTGCTGTGGTGGATCAATTCTCTGAGGCAGTGACATTCCATGAGGCCAATGGCATTTTCCCCTCAACCAGTCAGCGCTATGATGTGCAGAGTGTTGACTTAAATCAGTCCGCTTCTCACCTTCAAGGATCAGAAGTTGTCTCTACTCCCAACCTTCAAGTAGAGGACTATAACTTTCAGGAGGATGACTTCTTGGAAATCAATGATCTCGATGGTTCTGAACTTACATTGTCAAATATGGAAACACCAGTGGAGAACCTGCAGTTTGAAGATGGTTTGAGTGAACTTGATCTGTTCCAAGATGCAGAGATGTTTCTTTGTGACTTGGGACCAATCAACGAGGAAACCATTCCTCATTCGTATATGAATAATGCCTCTGGAAGCAACATCGAGAATCAGAATTATCACTTGCTGCACAATCCAGAGGATGCTACTCAAAATGTTAATGAATTCTGGATGCATGATGAAAGAAACATCCTGAGTCCCTTTGAAGGCTTTGATGGCTCTTTCTCTCAACAAAACCCAGGTGCTGTATGTGACTCTGCCAGCTTTCCTACCACTGAAGGCTATGATAATCAAAGTAGCACTGCAGAAGATGTTGCTACAAGTAGATTTTCTTCGGCCCTCTGGTCCTTTGTAGAGTCAATACCTACGACTCCTGCATCAGCTGCGGAAAATGCTCTAGTGAATCGGGCTTTGAATCGAATGTCTAGCTTCAGCCGAGTGAAGATTAATATCAAGCCAACAAACACAGCTGCAGGTAAAGACACTGCAACTACAAAGAGAGTGGGCAGAAAAGGATTTTCATTCCTTTTCTTCCCAATTCTTATAGCTTTATGTGCTTTCTTGTGGATTTCTCTTGGAACTTTTAGATTATTGGGGAGATGTGTTGCTCCTTGA 1668 0.4388 MGAEAGATECFSKAMASMPGFRFHPTDEELVMYYLKRKICGKRLKLDVILETDVYKWDPEELPGLSVLRTGDRQWFFFCHRDRKYPNGARSNRATRQGYWKATGKDRNVTCNSRSVGVKKTLVFYRGRAPNGERTDWVMHEYTMDEEELNRCQGIKDYFALYKLYKKSGPGPKNGEQYGAPFKEEEWADDECVDFNINSADRELANTVPVNDQLRPLADDEVTDMINQILDDELALDQQFGDSLLEFPQVVSEETRSAVVDQFSEAVTFHEANGIFPSTSQRYDVQSVDLNQSASHLQGSEVVSTPNLQVEDYNFQEDDFLEINDLDGSELTLSNMETPVENLQFEDGLSELDLFQDAEMFLCDLGPINEETIPHSYMNNASGSNIENQNYHLLHNPEDATQNVNEFWMHDERNILSPFEGFDGSFSQQNPGAVCDSASFPTTEGYDNQSSTAEDVATSRFSSALWSFVESIPTTPASAAENALVNRALNRMSSFSRVKINIKPTNTAAGKDTATTKRVGRKGFSFLFFPILIALCAFLWISLGTFRLLGRCVAP 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc259g00004 555 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 261 - -
Stsc259g00004 555 FunFam Nac domain-containing protein 86 26 170 - -
Stsc259g00004 555 SUPERFAMILY NAC domain 15 167 IPR036093 GO:0003677|GO:0006355
Stsc259g00004 555 Gene3D NAC domain 26 169 IPR036093 GO:0003677|GO:0006355
Stsc259g00004 555 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Stsc259g00004 555 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc259g00004 Stsc-Chr259 31568 35674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc259g00004 3 553 NAC Transcription Factor Family AT1G34190 43.718 2.25e-137 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc259g00004 NAM 2.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc259g00004 - - gmx:100794925 785.793