Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc259g00003 | ATGGCCTCCTCCCAGCATCGCTGCGTTTTTGTTGGCAATATTCCATATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGTCCTGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAGGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTGAGTGCTCGTCGGAATCTTCAGGGTTATGAAATTAACGGCCGGCAATTGCGCGTTGACTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAGCAGGGTCGTGGAGGGCCTGGATTGTCAGCATACGTTGACCCTCAGAAACAAGTAGGAAGCAGCTCAGTTGTCCATGGGGATGCTGCTCATCACCAACCTATTGGTCTTCATATTGCCATTACAGCTGCTTCTCTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCGTCCAGTCAGCTCAAAATGGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCCTTAACTCTGCATCTGGCTAAAATGTCAAGGAATCAGTTAAATGAGATTATCTCTGAGGTCAAGGGAATGGCCACACAGAATAAGGACATGGCTCAGCAGCTGTTGCTTTCAAGACCACAGTTACCAAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCGAAGTGTTACAAATGCCAAACCTTAGAATGGTTTCGGATCAGCCCTCACAACCTTCGGTAAATGAAGGCCAGCTAGGTCAGCCAGCATCGGTTCAGACTCTGTCTGGCCTTCCCCAGAGCTTGGGACAGAGTACATTGACACCTTATGTTCAAGAAGGTCAACCCAGCATAATGCCCCATAATCCTTTGGTTCCTAATCAATTGAATACACATCCAAGGCCTCCGTTGCAGCCTAGAATGCCACTTCAACAACATTCAATCAACCATGTTGGACAGTTGGGAACTCTGTCAGGGCAGTCAAATTTAATGCCTCCTTCAGCACGACCCCAGTCATTGGGTGGTTTGTCTGTGAGGCCTTCAGTTCAACCTTCAACATCGACTGCCCCAAACCAGCAAAGACATGCCCCAATGCCACCACATTCAGCACTTGTTGGAAGCTCAACTGTAGGACATAATATTCAAATGATTCGACCAGATGCAAGCTTTCAGCCTGGCCCCTCAGTATCATCAGGAATTCCTCACTTAATTAGTAAGGAAGGTGATAGATCTGCATATTCAAACATGCCTTTGGGAGTAGAGAAAACAAATATCGTTCATGGTTTGTCCGAATCGTTTGGTCGCCCTTCGAAGCTCATGAAGTTGGATGAGGGAAGGAGCACACCTTTTCCTTTAGCAGATGTGCCTTTGACCAATGGTTCATCCCACATTCTTGGAAGTAGCTCATTGGCTACTCTTGCAGCTCCCAAAACAGAAGTGCGATACCCCGAGCAACAATCTGCTCAGCTTCCAGCAGATGTAGAGTCTGCTTTACTGCAACAAGTGTTGAATCTAACGCCGGAGCAATTGAGTTCGCTGCCGCCAGAGCAGCAACAACAGAAAGCATTTCCAACCTCACTCCATCTCCGGTGGGCCCCACTGGCTGCAGAGAAGAAGAAGCATTTGCTCCTGGAGAAGCCGGTGGCGCTGAACGTGAAGGAGTTCGATGAGATCGTTGATGCGTGCGAATCGAATGGCGTGCAGTTAATGGATAACACCATGTGGGTGCATAACCCCAGGACTCACGCCATGGCTGACTTCCTCAGAGATTCCAACCGTTTTGGAAAGCTCAAATCGGTTCGCACTTGCTTTACATTTGCTGCTGATTCTTACTACCTAAATAACGACATTCGCGTGAAGCCGGATCTCGATGCTCTTGGTTCTCTTGGTGATCAAGGTTGGTATTGCATCAGAGCCATTCTCTTAACTGCAAATTATGACTTGCCCAACACAGTTATCGCCTCGCGCGATCCGGTTCTCAATCAAGAAGGCGTGATCTTGGATTGTGGAGCTTCTCTGTATTGGGAGGATGGCAGAGTTGCAACCTTTCATTGCTCCTTCTTGGCCAACTTGACAATGGACATCACTGCTATTGGAACAAAAGGGACTCTTCATGTTCATGACTTTGTTATTCCTCATCAAGAGAAACAGGCCTCATTCTCTGCTGGCAGTGAAACTAGTTTCAATGATTTAGTCACAGGATGGGATATAAAGCCTAGAATTCACACCACCAACACAGATCTTCCTCAAGAGGCTCTTTTGATTAGAGAATTTGCGCGTTTGGTGGGAGAGATCAAGTACAAGAACTCAAAGCCTGATAAGAAGTGGCCACTTATTAGTAGGAAGACGCAGATTGTGGTTGATGCTGTGAAGGCTTCAATTGAGAGGGGTTTTGAGCCTATTCCCATTCAGGAATAA | 2409 | 0.4674 | MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGLSAYVDPQKQVGSSSVVHGDAAHHQPIGLHIAITAASLMTAALGGAQFGVQSAQNGLQSQSALAHDPLTLHLAKMSRNQLNEIISEVKGMATQNKDMAQQLLLSRPQLPKALFQAQIMLGMVTSEVLQMPNLRMVSDQPSQPSVNEGQLGQPASVQTLSGLPQSLGQSTLTPYVQEGQPSIMPHNPLVPNQLNTHPRPPLQPRMPLQQHSINHVGQLGTLSGQSNLMPPSARPQSLGGLSVRPSVQPSTSTAPNQQRHAPMPPHSALVGSSTVGHNIQMIRPDASFQPGPSVSSGIPHLISKEGDRSAYSNMPLGVEKTNIVHGLSESFGRPSKLMKLDEGRSTPFPLADVPLTNGSSHILGSSSLATLAAPKTEVRYPEQQSAQLPADVESALLQQVLNLTPEQLSSLPPEQQQQKAFPTSLHLRWAPLAAEKKKHLLLEKPVALNVKEFDEIVDACESNGVQLMDNTMWVHNPRTHAMADFLRDSNRFGKLKSVRTCFTFAADSYYLNNDIRVKPDLDALGSLGDQGWYCIRAILLTANYDLPNTVIASRDPVLNQEGVILDCGASLYWEDGRVATFHCSFLANLTMDITAIGTKGTLHVHDFVIPHQEKQASFSAGSETSFNDLVTGWDIKPRIHTTNTDLPQEALLIREFARLVGEIKYKNSKPDKKWPLISRKTQIVVDAVKASIERGFEPIPIQE | 802 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc259g00003 | 802 | FunFam | Cleavage stimulating factor 64 | 1 | 116 | - | - | |
Stsc259g00003 | 802 | Pfam | Hinge domain of cleavage stimulation factor subunit 2 | 162 | 229 | IPR025742 | - | |
Stsc259g00003 | 802 | Gene3D | - | 518 | 574 | - | - | |
Stsc259g00003 | 802 | Gene3D | Dihydrodipicolinate Reductase; domain 2 | 575 | 802 | - | - | |
Stsc259g00003 | 802 | FunFam | Cleavage stimulating factor 64 | 156 | 231 | - | - | |
Stsc259g00003 | 802 | Pfam | Oxidoreductase family, NAD-binding Rossmann fold | 520 | 567 | IPR000683 | GO:0000166 | |
Stsc259g00003 | 802 | SUPERFAMILY | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 575 | 759 | - | - | |
Stsc259g00003 | 802 | MobiDBLite | consensus disorder prediction | 236 | 306 | - | - | |
Stsc259g00003 | 802 | Gene3D | - | 157 | 231 | - | - | |
Stsc259g00003 | 802 | Gene3D | - | 488 | 517 | IPR038192 | - | |
Stsc259g00003 | 802 | MobiDBLite | consensus disorder prediction | 319 | 359 | - | - | |
Stsc259g00003 | 802 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
Stsc259g00003 | 802 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
Stsc259g00003 | 802 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 519 | 602 | IPR036291 | - | |
Stsc259g00003 | 802 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 79 | IPR000504 | GO:0003723 | |
Stsc259g00003 | 802 | MobiDBLite | consensus disorder prediction | 319 | 371 | - | - | |
Stsc259g00003 | 802 | Gene3D | - | 1 | 114 | IPR012677 | - | |
Stsc259g00003 | 802 | PANTHER | - | 520 | 800 | - | - | |
Stsc259g00003 | 802 | MobiDBLite | consensus disorder prediction | 236 | 292 | - | - | |
Stsc259g00003 | 802 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 103 | IPR035979 | GO:0003676 | |
Stsc259g00003 | 802 | CDD | RRM_CSTF2_RNA15_like | 7 | 83 | - | - | |
Stsc259g00003 | 802 | MobiDBLite | consensus disorder prediction | 84 | 103 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc259g00003 | Stsc-Chr259 | 20927 | 29643 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc259g00003 | 9 | 82 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 31.081 | 9.19e-07 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc259g00003 | K14407 | - | gmx:100794399 | 721.079 |