Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc259g00003 ATGGCCTCCTCCCAGCATCGCTGCGTTTTTGTTGGCAATATTCCATATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGTCCTGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAGGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTGAGTGCTCGTCGGAATCTTCAGGGTTATGAAATTAACGGCCGGCAATTGCGCGTTGACTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAGCAGGGTCGTGGAGGGCCTGGATTGTCAGCATACGTTGACCCTCAGAAACAAGTAGGAAGCAGCTCAGTTGTCCATGGGGATGCTGCTCATCACCAACCTATTGGTCTTCATATTGCCATTACAGCTGCTTCTCTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCGTCCAGTCAGCTCAAAATGGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCCTTAACTCTGCATCTGGCTAAAATGTCAAGGAATCAGTTAAATGAGATTATCTCTGAGGTCAAGGGAATGGCCACACAGAATAAGGACATGGCTCAGCAGCTGTTGCTTTCAAGACCACAGTTACCAAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCGAAGTGTTACAAATGCCAAACCTTAGAATGGTTTCGGATCAGCCCTCACAACCTTCGGTAAATGAAGGCCAGCTAGGTCAGCCAGCATCGGTTCAGACTCTGTCTGGCCTTCCCCAGAGCTTGGGACAGAGTACATTGACACCTTATGTTCAAGAAGGTCAACCCAGCATAATGCCCCATAATCCTTTGGTTCCTAATCAATTGAATACACATCCAAGGCCTCCGTTGCAGCCTAGAATGCCACTTCAACAACATTCAATCAACCATGTTGGACAGTTGGGAACTCTGTCAGGGCAGTCAAATTTAATGCCTCCTTCAGCACGACCCCAGTCATTGGGTGGTTTGTCTGTGAGGCCTTCAGTTCAACCTTCAACATCGACTGCCCCAAACCAGCAAAGACATGCCCCAATGCCACCACATTCAGCACTTGTTGGAAGCTCAACTGTAGGACATAATATTCAAATGATTCGACCAGATGCAAGCTTTCAGCCTGGCCCCTCAGTATCATCAGGAATTCCTCACTTAATTAGTAAGGAAGGTGATAGATCTGCATATTCAAACATGCCTTTGGGAGTAGAGAAAACAAATATCGTTCATGGTTTGTCCGAATCGTTTGGTCGCCCTTCGAAGCTCATGAAGTTGGATGAGGGAAGGAGCACACCTTTTCCTTTAGCAGATGTGCCTTTGACCAATGGTTCATCCCACATTCTTGGAAGTAGCTCATTGGCTACTCTTGCAGCTCCCAAAACAGAAGTGCGATACCCCGAGCAACAATCTGCTCAGCTTCCAGCAGATGTAGAGTCTGCTTTACTGCAACAAGTGTTGAATCTAACGCCGGAGCAATTGAGTTCGCTGCCGCCAGAGCAGCAACAACAGAAAGCATTTCCAACCTCACTCCATCTCCGGTGGGCCCCACTGGCTGCAGAGAAGAAGAAGCATTTGCTCCTGGAGAAGCCGGTGGCGCTGAACGTGAAGGAGTTCGATGAGATCGTTGATGCGTGCGAATCGAATGGCGTGCAGTTAATGGATAACACCATGTGGGTGCATAACCCCAGGACTCACGCCATGGCTGACTTCCTCAGAGATTCCAACCGTTTTGGAAAGCTCAAATCGGTTCGCACTTGCTTTACATTTGCTGCTGATTCTTACTACCTAAATAACGACATTCGCGTGAAGCCGGATCTCGATGCTCTTGGTTCTCTTGGTGATCAAGGTTGGTATTGCATCAGAGCCATTCTCTTAACTGCAAATTATGACTTGCCCAACACAGTTATCGCCTCGCGCGATCCGGTTCTCAATCAAGAAGGCGTGATCTTGGATTGTGGAGCTTCTCTGTATTGGGAGGATGGCAGAGTTGCAACCTTTCATTGCTCCTTCTTGGCCAACTTGACAATGGACATCACTGCTATTGGAACAAAAGGGACTCTTCATGTTCATGACTTTGTTATTCCTCATCAAGAGAAACAGGCCTCATTCTCTGCTGGCAGTGAAACTAGTTTCAATGATTTAGTCACAGGATGGGATATAAAGCCTAGAATTCACACCACCAACACAGATCTTCCTCAAGAGGCTCTTTTGATTAGAGAATTTGCGCGTTTGGTGGGAGAGATCAAGTACAAGAACTCAAAGCCTGATAAGAAGTGGCCACTTATTAGTAGGAAGACGCAGATTGTGGTTGATGCTGTGAAGGCTTCAATTGAGAGGGGTTTTGAGCCTATTCCCATTCAGGAATAA 2409 0.4674 MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGLSAYVDPQKQVGSSSVVHGDAAHHQPIGLHIAITAASLMTAALGGAQFGVQSAQNGLQSQSALAHDPLTLHLAKMSRNQLNEIISEVKGMATQNKDMAQQLLLSRPQLPKALFQAQIMLGMVTSEVLQMPNLRMVSDQPSQPSVNEGQLGQPASVQTLSGLPQSLGQSTLTPYVQEGQPSIMPHNPLVPNQLNTHPRPPLQPRMPLQQHSINHVGQLGTLSGQSNLMPPSARPQSLGGLSVRPSVQPSTSTAPNQQRHAPMPPHSALVGSSTVGHNIQMIRPDASFQPGPSVSSGIPHLISKEGDRSAYSNMPLGVEKTNIVHGLSESFGRPSKLMKLDEGRSTPFPLADVPLTNGSSHILGSSSLATLAAPKTEVRYPEQQSAQLPADVESALLQQVLNLTPEQLSSLPPEQQQQKAFPTSLHLRWAPLAAEKKKHLLLEKPVALNVKEFDEIVDACESNGVQLMDNTMWVHNPRTHAMADFLRDSNRFGKLKSVRTCFTFAADSYYLNNDIRVKPDLDALGSLGDQGWYCIRAILLTANYDLPNTVIASRDPVLNQEGVILDCGASLYWEDGRVATFHCSFLANLTMDITAIGTKGTLHVHDFVIPHQEKQASFSAGSETSFNDLVTGWDIKPRIHTTNTDLPQEALLIREFARLVGEIKYKNSKPDKKWPLISRKTQIVVDAVKASIERGFEPIPIQE 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc259g00003 802 FunFam Cleavage stimulating factor 64 1 116 - -
Stsc259g00003 802 Pfam Hinge domain of cleavage stimulation factor subunit 2 162 229 IPR025742 -
Stsc259g00003 802 Gene3D - 518 574 - -
Stsc259g00003 802 Gene3D Dihydrodipicolinate Reductase; domain 2 575 802 - -
Stsc259g00003 802 FunFam Cleavage stimulating factor 64 156 231 - -
Stsc259g00003 802 Pfam Oxidoreductase family, NAD-binding Rossmann fold 520 567 IPR000683 GO:0000166
Stsc259g00003 802 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 575 759 - -
Stsc259g00003 802 MobiDBLite consensus disorder prediction 236 306 - -
Stsc259g00003 802 Gene3D - 157 231 - -
Stsc259g00003 802 Gene3D - 488 517 IPR038192 -
Stsc259g00003 802 MobiDBLite consensus disorder prediction 319 359 - -
Stsc259g00003 802 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Stsc259g00003 802 SMART rrm1_1 8 81 IPR000504 GO:0003723
Stsc259g00003 802 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 519 602 IPR036291 -
Stsc259g00003 802 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Stsc259g00003 802 MobiDBLite consensus disorder prediction 319 371 - -
Stsc259g00003 802 Gene3D - 1 114 IPR012677 -
Stsc259g00003 802 PANTHER - 520 800 - -
Stsc259g00003 802 MobiDBLite consensus disorder prediction 236 292 - -
Stsc259g00003 802 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Stsc259g00003 802 CDD RRM_CSTF2_RNA15_like 7 83 - -
Stsc259g00003 802 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc259g00003 Stsc-Chr259 20927 29643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc259g00003 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 9.19e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc259g00003 K14407 - gmx:100794399 721.079