Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc257g00006 ATGGATTTGTTTGGCTCAAATGGAAATGACCACGAGGATTCTCTGCCGCCACCACCACCAGTCCCACCAGATGTTGTGCCGGCCAAAGCAGAGCAGGAACTCCCCCCTGAGCCGCCGAAGAAAACCCGGGTGCCAATTGCCAGGCGTGGTCTAGGTTCGAAGGGTCAGAAGCTGACTCTGATGACCAATCACTTCAAAGTGAATGTAAACAACACTGAAGAGGAATTCTACCAGTATAGTGTGGCTCTTTCTTATGAAGATGGCCGCCCTGTGGAAGGAAAGGGTGCTGGAAGGAAAGTGATAGACAAAGTGAAGGAAACTTATGACTCTGAGTTGAACGGGAAGGACTTTGCTTATGATGGTGAAAAAACTTTGTTCACTGTTGGGTCTCTAGCTCGGAACAAGCTTGAGTTTACTGTAGTTCTTGAGGATGTTACCCCAAGCAGAAATAATGGAAACTGCAGCCCTGAAGGTCATGGAAGTCCCAATGAAAATGATAGGAAGAGGATGAGGCGCCCATACCGCGCGAAAACTTTTAAAGTGGAGATTAGCTATGCTAATAAAATCCCAATGAAAGCCATTACCAATGCTCTTCGTGGGCAGGAAACTGAGAATTATCAAGAAGCTATCCGAGTGCTTGATATCATCCTGAGGCAACATGCTGCCAAGCAGGGATGCTTGCTTGTGCGCCAATCCTATTTCCATAATGATCCAAAGAATTTTGCTGATGTAGGAGGGGGGGTTCTTGGTTGCCGAGGCTTCCATTCAAGTTTTAGAACCACTCAGAGTGGCCTGTCACTCAATATAGATGTTTCCACTACCATGATTATTACCCCTGGGCCTGTTGTGGACTTTTTAATTGCCAATCAGAATGTGAGAGATCCCTATTCACTTGACTGGGCTAAGGCCAAAAGGACACTTAAAAATTTGAGGATTAGAACTAGTCCCTCCAATCAGGAGTTCAAGATTACTGGTCTGAGTGAACTTCCCTGCAAAGAACAGACTTTTACACTAAAGACCAAAGGTGGAGATGGTGAAGAAACAGAAGTGACTGTTTATGACTATTTTGTTAAACAACGCAATATAGATCTCCGCTACTCAGGTGATCTTCCATGTATCAATGTGGGAAAGCCGAAACGTCCAACATATTTCCCCCTTGAGCTTTGCGATTTGGTGTCCCTGCAACGGTACACAAAAGCACTGTCTACCCTTCAAAGAGCTTCTCTGGTTGAGAAATCCAGGCAAAAACCACAGGAGAGGATGAGGGTGTTGAACGATGCACTCAAAACCAGCAACTATGCTTCTGAACCAATGCTACGTACCTGTGGTGTTCAAATAAGCAATAGCTTCACTCCAGTTGAAGGACGTGTTTTGCAAGCTCCAAGGCTGAAATTTGGGAATGGAGAGGACTTCAATCCTAGGAACGGGCGCTGGAATTTTAACAATAAGAAAATAGTTCAACCAACAAAGGTTGAGAGATGGGCAGTGGTTAACTTCTCTGCTCGCTGTGATGTAAATGGGCTTGTCAGGGACCTGATAAAATGTGGAGGAATGAAGGGAATTATGATTGAACCACCATTTGATGTCTTTGAAGAACAAGGTAATAACAGACGTGCCCCTCCACTTGTCAGGGTGGAGAAAATGTTTGAACTGGTTCAATCTAAACTTCCTGGGGCTCCTAAGTTCCTGCTTTGTCTTCTGCCAGAGCGGAAGAATTCTGAACTTTATGGTCCTTGGAAGAAGAAGAACCTTTCTGACTTTGGAATTGTTACTCAATGCATTGCTCCAACAAGGGTCAATGACCAGTATTTGACCAATGTTTTGTTGAAAATAAATGCCAAGCTTGGTGGGTTGAATTCTATGCTAGGTGTGGAGCACTCCCCTTCTATTCCTATTGTTTCAAAAGCTCCTACCCTAATACTTGGAATGGATGTGTCCCACGGCTCTCCGGGGCAATCCGATATTCCATCAATTGCTGCGGTGGTGAGCTCTAGAGAATGGCCACTGATATCTAAGTATAGGGCATGTGTTCGAACACAGTCTCCCAAGGTTGAAATGATTGATAATTTATTTAAGAAAGTATCTGACAAAGATGATGAAGGAATAATCAGGGAACTTTTGATTGACTTCTATTCAAGTTCTGGAAAGAGGAAACCTGATAATATAATTATATTCAGGGATGGTGTTAGTGAGTCTCAATTCAATCAAGTTTTGAACAAAGAACTTGATCAGATCATTCAGGCCTGCAAATTTCTGGATGAGAACTGGGATCCCAAGTTTTTGGTGATTGTTGCTCAAAAGAATCACCATACAAAGTTTTTCCAGCAGGGATCACCTGACAATGTTCCTCCTGGAACTGTTATTGACAACAAGATTTGTCATCCTCGGAACTATGATTTTTACATGTGTGCCCATGCTGGAATGATTGGTACTACCAGGCCTACTCACTACCATGTGCTGTTGGATGAGATTGGTTTCTCGCCAGATGATCTGCAGGAACTTGTTCATTCTCTTTCTTATGTGTATCAGAGGAGTACCACTGCCATCTCTGTTGTTGCTCCAATATGCTATGCTCATCTGGCTGCAACTCAGATGGGACAGTTTATGAAATACGAAGACAAATCTGAGACCTCATCAAGCCATGGTGGACTCACTGCTGCTGGAGCTGTTCCTGTCCCCCAGTTGCCCAAGTTGAACGACAGTGTTTGCAACTCTATGTTCTTTTGTTAG 2730 0.4392 MDLFGSNGNDHEDSLPPPPPVPPDVVPAKAEQELPPEPPKKTRVPIARRGLGSKGQKLTLMTNHFKVNVNNTEEEFYQYSVALSYEDGRPVEGKGAGRKVIDKVKETYDSELNGKDFAYDGEKTLFTVGSLARNKLEFTVVLEDVTPSRNNGNCSPEGHGSPNENDRKRMRRPYRAKTFKVEISYANKIPMKAITNALRGQETENYQEAIRVLDIILRQHAAKQGCLLVRQSYFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLIANQNVRDPYSLDWAKAKRTLKNLRIRTSPSNQEFKITGLSELPCKEQTFTLKTKGGDGEETEVTVYDYFVKQRNIDLRYSGDLPCINVGKPKRPTYFPLELCDLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLNDALKTSNYASEPMLRTCGVQISNSFTPVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPTKVERWAVVNFSARCDVNGLVRDLIKCGGMKGIMIEPPFDVFEEQGNNRRAPPLVRVEKMFELVQSKLPGAPKFLLCLLPERKNSELYGPWKKKNLSDFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSMLGVEHSPSIPIVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSREWPLISKYRACVRTQSPKVEMIDNLFKKVSDKDDEGIIRELLIDFYSSSGKRKPDNIIIFRDGVSESQFNQVLNKELDQIIQACKFLDENWDPKFLVIVAQKNHHTKFFQQGSPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTTRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKYEDKSETSSSHGGLTAAGAVPVPQLPKLNDSVCNSMFFC 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc257g00006 909 ProSiteProfiles PAZ domain profile. 304 393 IPR003100 GO:0005515
Stsc257g00006 909 MobiDBLite consensus disorder prediction 147 169 - -
Stsc257g00006 909 SMART PAZ_2_a_3 280 418 IPR003100 GO:0005515
Stsc257g00006 909 Gene3D - 629 909 IPR036397 GO:0003676
Stsc257g00006 909 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 39 871 - -
Stsc257g00006 909 SUPERFAMILY PAZ domain 274 433 IPR036085 GO:0005515
Stsc257g00006 909 Pfam Piwi domain 563 870 IPR003165 GO:0003676
Stsc257g00006 909 SUPERFAMILY Ribonuclease H-like 546 868 IPR012337 -
Stsc257g00006 909 MobiDBLite consensus disorder prediction 1 44 - -
Stsc257g00006 909 FunFam Protein argonaute 3 630 909 - -
Stsc257g00006 909 SMART Piwi_a_2 562 870 IPR003165 GO:0003676
Stsc257g00006 909 Gene3D - 457 623 - -
Stsc257g00006 909 CDD Piwi_ago-like 437 864 IPR045246 -
Stsc257g00006 909 Pfam N-terminal domain of argonaute 57 217 IPR032474 -
Stsc257g00006 909 Coils Coil 735 755 - -
Stsc257g00006 909 ProSiteProfiles Piwi domain profile. 562 870 IPR003165 GO:0003676
Stsc257g00006 909 FunFam Protein argonaute 7 274 397 - -
Stsc257g00006 909 Pfam PAZ domain 283 409 IPR003100 GO:0005515
Stsc257g00006 909 CDD PAZ_argonaute_like 279 392 - -
Stsc257g00006 909 Gene3D paz domain 273 397 - -
Stsc257g00006 909 Pfam Argonaute linker 2 domain 419 465 IPR032472 -
Stsc257g00006 909 SMART DUF1785_2 227 279 IPR014811 -
Stsc257g00006 909 Pfam Argonaute linker 1 domain 229 277 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc257g00006 Stsc-Chr257 30821 38484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc257g00006 48 909 Eukaryotic Initiation Factors Gene Family AT5G43810 35.222 8.83e-162 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc257g00006 K11593 - gmx:100779439 1582