Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc255231g00001 GATAGGAAGTATCCTAATGGTGCGAGGTCAAACCGAGCAACAAGGCAAGGGTACTGGAAAGCAACAGGAAAGGATCGTAATGTGACCTGCAATTCTCGGTCAGTTGGAGTGAAGAAGACTCTGGTTTTCTATAGAGGCAGAGCTCCTAATGGTGAGCGGACTGATTGGGTTATGCACGAATACACCATGGATGAAGAAGAGCTCAATAGGTGCCAGGGTATTAAG 225 0.4711 DRKYPNGARSNRATRQGYWKATGKDRNVTCNSRSVGVKKTLVFYRGRAPNGERTDWVMHEYTMDEEELNRCQGIK 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc255231g00001 75 ProSiteProfiles NAC domain profile. 1 75 IPR003441 GO:0003677|GO:0006355
Stsc255231g00001 75 Pfam No apical meristem (NAM) protein 1 62 IPR003441 GO:0003677|GO:0006355
Stsc255231g00001 75 Gene3D NAC domain 1 73 IPR036093 GO:0003677|GO:0006355
Stsc255231g00001 75 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 65 - -
Stsc255231g00001 75 SUPERFAMILY NAC domain 1 69 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc255231g00001 Stsc-Chr255231 13 238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc255231g00001 1 75 NAC Transcription Factor Family AT1G34180 80.000 2.32e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc255231g00001 NAM 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc255231g00001 - - twl:119993198 152.525