Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc253g00007 ATGATGTTGAATCGCGGGTCAAATGTTTCGGCTGAAGGGGGTGGAGATGAGCTGTATACGCAGCTATGGAAGGGATGTGCGGGACCACTGGTGGACGTTCCCCGTGTTGGGGAGAGGGTCTTCTACTTCCCTCAGGGGCACATGGAACAATTGGAGGCATCTACGAATCAGGAGCTAAATCAGAGGATTCCTTTGTTCAAACTTCCCTCGAAGATCCTCTGTCGCGTCGTGAACATTCAGTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTGCCGGAGTCTAATCAAGCTGATGAGCCTACGAGCCCCGATCCGTCCCCTGCTGAACCAACAAAACCGACTGTTCACTCGTTCTCGAAGGTCTTGACTGCTTCGGATACGAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACAGAGTGCCTTCCTCCTTTGGACATGTCTCAACCAACACCGACTCAGGAATTGGTTGCGAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAACCACGCAGACACTTGCTCACAACTGGGTGGAGTACTTTTGTGACTTCCAAAAGATTGGTTGCGGGAGACACCTTTGTATTTTTAAGGGGGCGAAATGGGGAATTGCGTGTAGGAGTGCGCCGTCTTGCTCGTCAGCAGAGTAACATGCCGTCATCTGTAATTTCCAGCCAGAGCATGCACCTCGGTGTGCTTGCAACTGCCTCTCATGCTGTTGCTACTCAGACTCTTTTCGTAGTTTATTACAAGCCACGCACGAGCCAGTTCATCATCGGCCTCAACAAGTATTTGGATGCAGTCAACAACAAGTTTAGTGTTGGCATGAGGTTTAAGATGAGGTTCGAAGGGGATGATTCCACGGACACTGATAAAAGATTTTCGGGTACCATCGTTGGATTGGAAGATATATCTCCTCACTGGGAAAATTCTAAGTGGCGATCACTTAAGGTTCAATGGGATGAACCTGCAGCTGTTCCAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTATGTGGCTACTGCTCTTGCACCCTCGGTTCAACCTACTGTTGTAAAGGCCAAAAGGCCTCGACCACCGAGTGAACATCCCGATCTTGACACCCAATCGGCTGCCTCGGTTTTCTGGGATTCCGGTCTAACACAGGCCGATATGACACAGCATAGTGTGATGGCCGAAAGTAAAAGGAGTGATAGTACCAGCATGTGGCATCATAAGCAAATCGATATGAATAGTAAGAGCAACAACAATCTGATATCAAGGAATCAGACAGAAGGAAGTTGGCTGTCTTCCCCCCATTCTTGTTGTCCTTCGCAATTATTTCAGGACACAATGGATGACAGCAAGAGCGTCTCAGCTTGGCCTGCTTCGAATCCACACTCGTCTAGATTGAACAATGATCATGTGCATGATCAGGTTGACAAGGAAAACAAAGCCGAGACTGCTACAAGTTGTCGACTTTTTGGAATTGACCTTATTGATCATTCCCGGAACTCATCTACTGTAGAGAAGGCAGCTGCACATGCAGTAAACGTTAACAGTTTCACCTCTGAAGGTTGTGTTAGTACAATTTCTAAAACTGAGGCAGGTCAGAAGTCTGATGCCTCGAAGACCGGTAAGGAGAGGAAACAAGAGCAGCAGCAAGTATCACCAAAAGAGACTCAGAGCAAGCAGATCTGTAGCAGAAGTCGAACCAAGGTATCGATCATAGATTTGTTCATTTGGGTAATAAATTAA 1785 0.4723 MMLNRGSNVSAEGGGDELYTQLWKGCAGPLVDVPRVGERVFYFPQGHMEQLEASTNQELNQRIPLFKLPSKILCRVVNIQLLAEQETDEVYAQITLVPESNQADEPTSPDPSPAEPTKPTVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGRNGELRVGVRRLARQQSNMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGLNKYLDAVNNKFSVGMRFKMRFEGDDSTDTDKRFSGTIVGLEDISPHWENSKWRSLKVQWDEPAAVPRPDRVSPWEIEPYVATALAPSVQPTVVKAKRPRPPSEHPDLDTQSAASVFWDSGLTQADMTQHSVMAESKRSDSTSMWHHKQIDMNSKSNNNLISRNQTEGSWLSSPHSCCPSQLFQDTMDDSKSVSAWPASNPHSSRLNNDHVHDQVDKENKAETATSCRLFGIDLIDHSRNSSTVEKAAAHAVNVNSFTSEGCVSTISKTEAGQKSDASKTGKERKQEQQQVSPKETQSKQICSRSRTKVSIIDLFIWVIN 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc253g00007 594 MobiDBLite consensus disorder prediction 542 574 - -
Stsc253g00007 594 SMART B3_2 124 226 IPR003340 GO:0003677
Stsc253g00007 594 Gene3D - 285 359 - -
Stsc253g00007 594 FunFam Auxin response factor 285 358 - -
Stsc253g00007 594 SUPERFAMILY DNA-binding pseudobarrel domain 114 253 IPR015300 -
Stsc253g00007 594 CDD B3_DNA 122 224 IPR003340 GO:0003677
Stsc253g00007 594 MobiDBLite consensus disorder prediction 549 564 - -
Stsc253g00007 594 FunFam Auxin response factor 122 226 - -
Stsc253g00007 594 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 584 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc253g00007 594 Gene3D - 121 225 IPR015300 -
Stsc253g00007 594 MobiDBLite consensus disorder prediction 100 122 - -
Stsc253g00007 594 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Stsc253g00007 594 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Stsc253g00007 594 Pfam Auxin response factor 250 331 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc253g00007 Stsc-Chr253 47674 51771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc253g00007 11 585 B3 DNA Binding Superfamily AT4G23980 57.315 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc253g00007 B3 1.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc253g00007 K14486 - gmx:100779003 960.674