Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc253g00004 ATGGTGGTTCCTGCTTCTCCATCCTGTTTCCAGATTATGCTGCTTCTTTATCTCACATTTTTGTTGCATATAGCATCTCATCATCACATTCAACCTGCTGCTGCTGCTTCAAAAGTTGAATACCTTCCTGGTTTTGATGGTCCCCTTCCCTTTCACCTTGAAACTGGATATGTGGGGTTGGGGGACACAAATGATGACTTGCAAGTTTTCTACTATTTTATTAAGTCAGAAAATGATCCTGTGAATGATCCTCTTATGCTATGGCTAACTGGTGGTCCTGGTTGTTCTTCTTTCTCTGCCCTTGCCTTTCAAATTGGTCCAATAAAATTTAAAATTGAGGAATTCAATGGTAGCTTACCTAATTTGATCTTGAGGTCACAGTCATGGACAAAGGTAAGTAGCATTATTTTTGCTGATTTGCCATTTGGAACAGGCTTCTCTTATGCCAACAATGTCACAGCTCATCGCAGTCATTGGAAATTAATTCACCATACCCATCAATTTATTAGGAAGTGGCTTATGAATCACCCGGAATTTATTTCAAATAAGTTTTACATGGGAGCTGATTCATACTCTGGTATTCCTGCCCCCGGTATTGTTCAAGAAATTTCAAATGGAAATGATCAAGGTCTTCAACCCTGGATAAATCTACAGGGATATATATTAGGAAACCCGGTTACCACAGGAAAAGAGTCAAATGATAAGATCCCATATGCTCATGGGATGGGACTTATTTCTGATGAACTCTATTTGTCACTACAGAGAAACTGTAAAGGGGAGTATATCGATATAAATTCCAAAAATGAAGTGTGTTTAAGAGACATGCAATATTTTCATGAGTGCCTTTTGGGAACTAATGAGTGGTACGTTTTGGATAGCGATTGCAAACTTGATTTTCTTATGGGTGATCAAGGGACACACAAGAGAATTTTGACTCAGAAGTTGGAGGGTCCTCTTAGTTCTTATCTAACAGTGCCAACAACAGTAACCTGCCAAGTTGTTTATTGTTATTTCCTTGGCACCCAATGGGCCAATGATGACAGTGTTCGCAAGGCACTGCATGTTAGAGAGGGCATAGGAAAATGGAAACGATGTTACACTACTGATTTTGACTTTGACATAGCTACCAGTTTTGAATTCCATGTAAATCTTAGTGCAAAAGGCTACCGTTCCTTGATATTTAGCGGCGATCACGACTTAGTCGTTCCTTTCTCGTCAACGCAGGCGTGGATAAGGGCTTTAAACTACTCCATTCTAGATGATTGGAGGCCATGGCTTTTGAATGCCCAAGTTGCAGGATATACAAGGACTTACTCAAATCAAATGACATTTGCAACCGTAAAGGGTGCAGGGCATACAGCTGCTGAGTACAAGCCAGATGAAGGTTTAGTCATGTTCTCTAGGTGGCTCTCTAATGTCCCTTTATGA 1428 0.4027 MVVPASPSCFQIMLLLYLTFLLHIASHHHIQPAAAASKVEYLPGFDGPLPFHLETGYVGLGDTNDDLQVFYYFIKSENDPVNDPLMLWLTGGPGCSSFSALAFQIGPIKFKIEEFNGSLPNLILRSQSWTKVSSIIFADLPFGTGFSYANNVTAHRSHWKLIHHTHQFIRKWLMNHPEFISNKFYMGADSYSGIPAPGIVQEISNGNDQGLQPWINLQGYILGNPVTTGKESNDKIPYAHGMGLISDELYLSLQRNCKGEYIDINSKNEVCLRDMQYFHECLLGTNEWYVLDSDCKLDFLMGDQGTHKRILTQKLEGPLSSYLTVPTTVTCQVVYCYFLGTQWANDDSVRKALHVREGIGKWKRCYTTDFDFDIATSFEFHVNLSAKGYRSLIFSGDHDLVVPFSSTQAWIRALNYSILDDWRPWLLNAQVAGYTRTYSNQMTFATVKGAGHTAAEYKPDEGLVMFSRWLSNVPL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc253g00004 475 Gene3D alpha/beta hydrolase 32 300 IPR029058 -
Stsc253g00004 475 FunFam Serine carboxypeptidase-like 11 33 475 - -
Stsc253g00004 475 Gene3D - 336 475 - -
Stsc253g00004 475 SUPERFAMILY alpha/beta-Hydrolases 39 474 IPR029058 -
Stsc253g00004 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185|GO:0006508
Stsc253g00004 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Stsc253g00004 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 442 455 IPR001563 GO:0004185|GO:0006508
Stsc253g00004 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185|GO:0006508
Stsc253g00004 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 459 IPR001563 GO:0004185|GO:0006508
Stsc253g00004 475 FunFam Carboxypeptidase 330 474 - -
Stsc253g00004 475 Pfam Serine carboxypeptidase 43 472 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc253g00004 Stsc-Chr253 22041 28164 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc253g00004 27 66 Calmodulin-binding Proteins AT2G22960 52.381 2.24e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc253g00004 K16296 - gmx:100780069 706.057