Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc252g00005 ATGTCCATTACCATACCCTTTCTGGGTGATGAAAAAGCAGAAAGAAGCTTCAATAATGGAGATCAGGTTGCTAAATCTGCGGATGACTTGCACTCACTTCATGTTGGTAACACCTCCTTTTTCAAGACCTGCTTCCATGGGATTAATGCTATCTCAGGAATTGGGATAGTATCGATACCATATGCATTGGCTTCAGGGGGATGGCTAAGCATATCACTGCTGTTTCTGATAGCAATAGCTTGCTACTACACTGGCTTATTGGTCAAGAAATGCATGGACATGGATCCTCATATCAGAACCTTCCCTGACATTGGTCAACGTGCTTTTGGTGACAAAGGCAGATTAATGGTCTCCATTGCTATGAATTCAGAGCTTTACCTTGTTGTAACAGGTTACCTGATCTTGGAAGGTGACAACCTAAACAAGCTAATCCCAAATGTTGAAGTAAACCTTGGAGGAGGGTATGTGATTGGTGGAACAACAATATTTGCAATACTAGCAGCAATTGTGATCTTGCCAACAGTGTTGTTGGAAGATCTTAGCTTGTTGTCTTACGTGTCAGCTAGTGGGGCTTTGGCTTCTACAGTGTTCTTGCTCTCTCTGTTGTGGAATGGAACTATTGATGGAACAGGCTTCAATGGAAAAGGTACAGTTTTCAGGTGGAGTGGCATTCCTGCTGCAGTTAGTTTGTATGCATTTTGCTACAGTGCTCATCCTGTTCTTCCCACACTCTACAATGCCATGAGGAACAAGAATCAGTTCTCAACTGTTCTATTTGTGTGCTTTCTAGTGTGCACTCTTGGTTATGCTGCAGCAGCAATCTTAGGATACCTAATGTTTGGAGATGAAGTTGAATCACAAGTTACATTGAACCTTCCAACAGGGAAATTCAGTTCACAAGTAGCAATATACACAACCTTGGTGAACCCAATAGCCAAATATGCATTGATGCTAACACCAATTGTGAATGCAGTGAAGAACAAGATCTCATGCAATTACAGAAAGAAGAGGCTCACACATGTTATTGTTAGTACCACATTGCTCATTACCACTCTTATTGTGGCTGTGGCAATTCCCTTATTTGGGTACCTAATGTCACTTGTTGGAGCTTTGCTAAGTGTCTCAGCATCAATTCTTGTCCCATCTGTGTGTTACTTGAAGATCTCTGGAGCTTACAAGAGATTTGGCTCAGAAATGATCATAAACTATTCAATTATAATCATGGGGGTTGCTATTGCTGTTGTTGGTACTTACACTTCTCTGGTAGATATTGTTCACAATTTGTGA 1287 0.4118 MSITIPFLGDEKAERSFNNGDQVAKSADDLHSLHVGNTSFFKTCFHGINAISGIGIVSIPYALASGGWLSISLLFLIAIACYYTGLLVKKCMDMDPHIRTFPDIGQRAFGDKGRLMVSIAMNSELYLVVTGYLILEGDNLNKLIPNVEVNLGGGYVIGGTTIFAILAAIVILPTVLLEDLSLLSYVSASGALASTVFLLSLLWNGTIDGTGFNGKGTVFRWSGIPAAVSLYAFCYSAHPVLPTLYNAMRNKNQFSTVLFVCFLVCTLGYAAAAILGYLMFGDEVESQVTLNLPTGKFSSQVAIYTTLVNPIAKYALMLTPIVNAVKNKISCNYRKKRLTHVIVSTTLLITTLIVAVAIPLFGYLMSLVGALLSVSASILVPSVCYLKISGAYKRFGSEMIINYSIIIMGVAIAVVGTYTSLVDIVHNL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc252g00005 428 PANTHER OS05G0424000 PROTEIN-RELATED 44 414 - -
Stsc252g00005 428 Pfam Transmembrane amino acid transporter protein 37 420 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc252g00005 Stsc-Chr252 25817 31023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc252g00005 23 425 Amino Acid or Auxin Permease AAAP Family AT3G28960 54.591 9.65e-159 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc252g00005 K15015 - gmx:100784690 625.935