Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2521g00001 ATGGAGAAATCGAACACACCAATGGAGACATCAGCAGCCAGCAGCTGGTTATCTGAATTGGAAATTGATGAGGATTACAATTTCTTTCCCGAGCTTGATTTTGATGTAGTCGATGAGGAAGATTTTCTTTCACATGAGTTAATAGCAAGTGATGACCTTCAAGGGAAGGCAACATTACAGGACCAATCTCTATCTGCGGAGTGCAATTCCAAAACCATAATAAGCAATAATTCTTGCACCGATGAAATTACCAGTTTTGAAGAGATGCTGAGAAGCTTCAATGATGAAAGCTTTTCACCAAAGCTTTCTTCATCTTCTTCAGTTTTATCTTTTAAGCCTCATCAGATTCTTTCCTTTGATAATTCAGATTCGTTATCATCTTCTCCTCCCAATAATTCGTCACGGTTTTATGGCTTGAAAAACACCTTAAACCAAACGCAAGATATGGAGGTTTCACTGCCATTTAAAACTACTCCAAATAATAATAATAATAACACCAACAACAACAACAGTGATTCCTTGAAGACACAAAATTCGGAAGCAAAGAGTAGCTCAACACTTGGTAAGAGGTCACCATCTCATGCTCAGGATCATATCATAGCTGAGAGAAAGAGAAGAGAGAAGATCAGCCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTAGGGGACTCCATCAAGTATGTGAAAGAGCTGAAAGAGCGTTTGGCAGTGCTGGAAGAAGAATGCAAGAAAACAAAGGCTTTGCCTCCTATGGCGATTCTGAACAAACAAGCAGACAGTGAATTGTGCGAAGAGAGCATTGTTGCTGCTGCTTCTTCTTATGGTAAAGGCGATGATACTGAATCATCGTCGTTACCACTTCCGCAAGTGGAAGCAAGGGAGTGTGGCCAAGAACTGTTCCTTCGATTCCATTGCCGGAAGGAAGAGGATATTTTGGTCAGAATCTTTTCTGAGATTCAAAGCCTTCGCTTGATGGTTCTTAATAGCAGTGTCTTATCGTTTGGAGATTCCATTCTTGACATAACTATCATTGTTCAGGCTGGCGAAGGTTACAGCTTGACCCTAAATGAAGTGGTCAAGAACCTACGTATGGCTACGTTGAAATTCATGTCGTAG 1149 0.4108 MEKSNTPMETSAASSWLSELEIDEDYNFFPELDFDVVDEEDFLSHELIASDDLQGKATLQDQSLSAECNSKTIISNNSCTDEITSFEEMLRSFNDESFSPKLSSSSSVLSFKPHQILSFDNSDSLSSSPPNNSSRFYGLKNTLNQTQDMEVSLPFKTTPNNNNNNTNNNNSDSLKTQNSEAKSSSTLGKRSPSHAQDHIIAERKRREKISQSFIALAALVPGLKKMDKASVLGDSIKYVKELKERLAVLEEECKKTKALPPMAILNKQADSELCEESIVAAASSYGKGDDTESSSLPLPQVEARECGQELFLRFHCRKEEDILVRIFSEIQSLRLMVLNSSVLSFGDSILDITIIVQAGEGYSLTLNEVVKNLRMATLKFMS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2521g00001 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Stsc2521g00001 382 Gene3D - 185 258 IPR036638 GO:0046983
Stsc2521g00001 382 MobiDBLite consensus disorder prediction 153 197 - -
Stsc2521g00001 382 Pfam Helix-loop-helix DNA-binding domain 197 242 IPR011598 GO:0046983
Stsc2521g00001 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 259 IPR036638 GO:0046983
Stsc2521g00001 382 PANTHER BHLH TRANSCRIPTION FACTOR 27 379 - -
Stsc2521g00001 382 MobiDBLite consensus disorder prediction 153 192 - -
Stsc2521g00001 382 Coils Coil 232 259 - -
Stsc2521g00001 382 SMART finulus 199 248 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2521g00001 Stsc-Chr2521 666 5786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2521g00001 190 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.279 2.78e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc2521g00001 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2521g00001 - - aip:107617512 452.981