Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc251g00010 ATGGCTGCTGCTTCTTCTTCTTCTTCTTTACCGAATGTTCCCAGAATCAAACACGATGTCTTTGTCAGCTTCAGAGGAGAAGATATCCGCACTTCTTTTCTTAGCCATTTGCATAAAGAGCTGCATCGTAACCAAATCGATTTCTTCGTAGATGATCAAAAAATTCACCCCGGAGATGAGATTTCATCCACGCTTCTTCAGGCCATTGAAGGATCTTTTATTTCATTGGTCATCTTTTCAGAAAACTATGCTTCTTCAGCTTGGTGCTTGAATGAACTAGTGAAAGTAATTGAATGCATGAAACAACATCAAAGGACTGTGATACCTGTTTTCTACAACGTCCTTCCCTCTGATGTTCGACATCAGAATAATTCTTTTAAGGAGGCTTTTGATAAACACCAACTCAGATTGAAGGAAAATATGATGAAGGTGCAAAGTTGGAGATTTGCTTTAAAGGAAGCTGCTGATTTATCTGGATTCCATTATCCATCAAAATATCAAGATGAATCTAAATTCATTGAAGAGATTGTGAAAGATGTTTCGGAGAAATTGTCTTCTATTTTATCAAGAGAATCCAAAGTTCTTGTTGGGATTGATGACAGTATTAGAAGTATTGAATCACTATTGGAAATTGAATCAAGTGAAGTCCGAATGATAGGAATTTGGGGGATGGGAGGAATAGGTAAGACTACTATTGCTGAAGTCTTATTTGACAAATATTCTTCCCAATATGAAGGCAGTTATATGTTGAAAAATGTAAGAGAAGAGTCACAAAAGTTTGGCGTTGTTTATTTATGTGACAAACTTGAATCGGAGTTATTAGCAGGAGAAAGCGGATCATCCAAAGCAAAATCCACTCTTTCCCGGAGAAAGTTAAGTCGAAAAAAGGTTTTCATAGTGCTTGATGATGTGGATACATTGCGGAAGTTAAAAGATCTTGTAACACAATCGTTGGGACCAGGTAGTAGGATCATTGTAACAACGAGAGACAAGCATGCCCTTACAAATGTTCATGATACATACGAGCTCAAAGGCTTGAACTTTGAAAATTCCCTTAAGCTTTTTAGCTTGAGGGCTTTCAGAAAAGTCTATCCTGATGATCATTATGAAAAGGTTTCGAAAATAGCCGTGAATTATGCAAATGGCATCCCATTGGCTTTAGAAGTTTTGGGTTCTTATTTACACTCTAAAACCATACAAGAATGGGAGAGTGCTTTGGGAAAACTCAAAATTTATCCTAACATAGAGATTTTTGATGTCTTAAAATTGAGTTATGAAGGGCTAGATGAGTTAGAGAGGAATATATTCCTTGACATTGTATTTTTTTTCAAAGGAAAAGATAAAGATGTTGTCATACCATTTCTAGAATCGTGTGGTTTTTTCCCTGCTGATGGCATAGGCAATCTTTCTCGTAAAGCTCTTATAACTATTTCAAAGCATAATGAAATAGAAATGCATGACTTGATAGAACAAATGGGTCGGGAAATAGTTCGTCGAGAATCAATTAAAGATCCAGGAAGACGTAGCCGCTTAAGTGACCCTGAAGATGTCTACAATGTGTTGAATGATAATAAGATGCCTGATACAAGGTTTCTCAAAATTTATGATTCATGGAGGAACCAAAAGTTAGGTAATGTGTACTTTTCTTCAACTCCGGAGTCATTTCCAAAGGGACTAAGATACTTGCAGTGGAGTGGCTGGCCTCTGAAGTCTCTTCCTCCAAATTTTTGTGCTGAGAAGCTTGTTGAACTTTCTATGCCATGGAGCGAAGTTTCTAAACTTTGGGATGGAGTTCAGGATCTTGTAAATTTAAAGAGGATTAACCTTAAGGGATGCAAAAAGCTGGTGGAGCTCCCTGATTTTACTCAGGCAACAAACCTTGAAGAAATAGATCTTGATGAATGTGCAGGGTTGGTGGAACTTCATCCATCCATTTTATCCATCCACAAGCTCAAAACCTTGAGTGTTTTTTGTTGCAAAGCTCTAGAGAGTCTTAAAGGCAAGATCCATTTGAAATCTCTTGAAAAACTCCATGCTGGTCACTGCTCAAACATGAATGAATTTTCAGTGTCATCAGAGGAACTAACAAGTTTGGATTTGAGTAGCACAATAATTGATAAGTTAGACTCATCAGTTGGCCGTCTCAGTAAACTTATACAGTTGAATCTATTTTATGTGAGACTTGAAACTCTTCCAAACGAGCTGTGTCTCTTAGTATCCCTTGAGGAACTGAATCTTAAAAGTTGCCAACAGTTGATTGAACTCCCTCCCAATATGAAAGCCTTATCGCCGTTAAATTATCTCAACATAACGGATTGCATCAGCCTTCGCTCTTTACCGGAGCTTCCGCCATCTATTGTACGTTTATTTGCTGACAACTGCACATCTTTGGAGAAATTATTCAATGCAAATGCAGTATTCAGTTTAAATCTAACGTCCATCTCATTTGGAAAGTGTAAGAGGCTTGATGTGAATTCATTCCCAAAATATGTGCTTCAAACAATGATGGGAGTAGCAATTAGAGACTTGTTGGGTGAGATGCTGCAATATAAATCTAGCAGCCAGGTTTGTTATCCCGGAAAGAAGGTTCCATCATGGTTCAAATATCACACACGTGGGAGTTCAGTTGACCTTGTTGCAGACCATAATCCTCATTATCCCCAAACACTATTGGGTTTCATTTTGTGCTGTGTTGTTCATCACAAGCATCCTGACGGTTATCAGAGAGGTGATTTGAAGATCAGTTGTCGTTCGGATTTAGGATGCAGGATAAAGTATATACCGAGAGATACAATCAGTTCAAACACTGTTTGTATATGGTTTGAAGAAGTTCGTGGTGACAATCGATTATGTGACAGTAATGTTAAGTTTGAATTCAAAGATGCATGTGTTGAGGAATTTCATGGCCTAGGTGAATGGAAGGTGATAAGGTGCGGGGTTTGCCCAGTATATGTCTCAGACATCCTTCATGTCCTTCAAAATGTGGTTCCCCACTTTCACTTCTTCTATGATAGACAGGACTGTGTAGACAGGAAGGAAGTTGATCAATTAGTTTTCACTCTTGATGAAGTCAAAACACGGCTGATTCACAAGATGGAACAACAACAAAAATATCCATCCTTGAGACCCTTTTATGGGATTTGCAACATGGAAGAACAAGAAGAGGAGGAGGAAGTGGAATTATGGTCCTATTGGCGCAAAAAACTGAGGGTGCAGAGAATCACTTCTTTGATCGGTGAAGGCCAAGAAATTACTACTTCAGTTTTCTTCTATTGCTCTTTTGAGGAGGTGCTGTATTTGAATGAGAGGCAGCTCCTATTTTGCAGTTATTAG 3333 0.3825 MAAASSSSSLPNVPRIKHDVFVSFRGEDIRTSFLSHLHKELHRNQIDFFVDDQKIHPGDEISSTLLQAIEGSFISLVIFSENYASSAWCLNELVKVIECMKQHQRTVIPVFYNVLPSDVRHQNNSFKEAFDKHQLRLKENMMKVQSWRFALKEAADLSGFHYPSKYQDESKFIEEIVKDVSEKLSSILSRESKVLVGIDDSIRSIESLLEIESSEVRMIGIWGMGGIGKTTIAEVLFDKYSSQYEGSYMLKNVREESQKFGVVYLCDKLESELLAGESGSSKAKSTLSRRKLSRKKVFIVLDDVDTLRKLKDLVTQSLGPGSRIIVTTRDKHALTNVHDTYELKGLNFENSLKLFSLRAFRKVYPDDHYEKVSKIAVNYANGIPLALEVLGSYLHSKTIQEWESALGKLKIYPNIEIFDVLKLSYEGLDELERNIFLDIVFFFKGKDKDVVIPFLESCGFFPADGIGNLSRKALITISKHNEIEMHDLIEQMGREIVRRESIKDPGRRSRLSDPEDVYNVLNDNKMPDTRFLKIYDSWRNQKLGNVYFSSTPESFPKGLRYLQWSGWPLKSLPPNFCAEKLVELSMPWSEVSKLWDGVQDLVNLKRINLKGCKKLVELPDFTQATNLEEIDLDECAGLVELHPSILSIHKLKTLSVFCCKALESLKGKIHLKSLEKLHAGHCSNMNEFSVSSEELTSLDLSSTIIDKLDSSVGRLSKLIQLNLFYVRLETLPNELCLLVSLEELNLKSCQQLIELPPNMKALSPLNYLNITDCISLRSLPELPPSIVRLFADNCTSLEKLFNANAVFSLNLTSISFGKCKRLDVNSFPKYVLQTMMGVAIRDLLGEMLQYKSSSQVCYPGKKVPSWFKYHTRGSSVDLVADHNPHYPQTLLGFILCCVVHHKHPDGYQRGDLKISCRSDLGCRIKYIPRDTISSNTVCIWFEEVRGDNRLCDSNVKFEFKDACVEEFHGLGEWKVIRCGVCPVYVSDILHVLQNVVPHFHFFYDRQDCVDRKEVDQLVFTLDEVKTRLIHKMEQQQKYPSLRPFYGICNMEEQEEEEEVELWSYWRKKLRVQRITSLIGEGQEITTSVFFYCSFEEVLYLNERQLLFCSY 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc251g00010 1110 SMART till_3 17 157 IPR000157 GO:0007165
Stsc251g00010 1110 Pfam NB-ARC domain 205 410 IPR002182 GO:0043531
Stsc251g00010 1110 SUPERFAMILY L domain-like 504 821 - -
Stsc251g00010 1110 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 160 IPR035897 -
Stsc251g00010 1110 Gene3D Ribonuclease Inhibitor 518 666 IPR032675 -
Stsc251g00010 1110 Gene3D Ribonuclease Inhibitor 670 810 IPR032675 -
Stsc251g00010 1110 Gene3D - 345 429 IPR042197 -
Stsc251g00010 1110 PRINTS Disease resistance protein signature 218 233 - -
Stsc251g00010 1110 PRINTS Disease resistance protein signature 599 615 - -
Stsc251g00010 1110 PRINTS Disease resistance protein signature 291 305 - -
Stsc251g00010 1110 PRINTS Disease resistance protein signature 380 394 - -
Stsc251g00010 1110 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 688 IPR044974 GO:0006952
Stsc251g00010 1110 Pfam TIR domain 17 196 IPR000157 GO:0007165
Stsc251g00010 1110 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc251g00010 1110 Gene3D - 15 185 IPR035897 -
Stsc251g00010 1110 Gene3D - 186 343 IPR027417 -
Stsc251g00010 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 439 IPR027417 -
Stsc251g00010 1110 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Stsc251g00010 1110 Pfam C-JID domain 858 987 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc251g00010 Stsc-Chr251 59566 64315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc251g00010 18 791 WRKY Transcription Factor Family AT4G12020 33.293 1.13e-98 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc251g00010 - - ahf:112729160 1350.88